Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11949 | 5' | -63.8 | NC_003278.1 | + | 34574 | 0.66 | 0.195427 |
Target: 5'- -----gUGCCGCCaCACCUUCGCCagCCa -3' miRNA: 3'- ucuacgACGGCGG-GUGGGAGCGG--GGa -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 7825 | 0.66 | 0.195427 |
Target: 5'- ---gGCcugGCCGaccacggcCCCACCCUCcCCCCUg -3' miRNA: 3'- ucuaCGa--CGGC--------GGGUGGGAGcGGGGA- -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 13144 | 0.67 | 0.175708 |
Target: 5'- cGAUGCcucgGCCGUCaGCCCaUCGCCUg- -3' miRNA: 3'- uCUACGa---CGGCGGgUGGG-AGCGGGga -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 31625 | 0.67 | 0.175708 |
Target: 5'- aAGcAUGCcGCCGCCCuCCCUgCGUuuUCCUg -3' miRNA: 3'- -UC-UACGaCGGCGGGuGGGA-GCG--GGGA- -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 22328 | 0.67 | 0.168328 |
Target: 5'- --cUGCUGagaCGCauccugugaucgaugCCGCCCUCGCCCg- -3' miRNA: 3'- ucuACGACg--GCG---------------GGUGGGAGCGGGga -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 8149 | 0.68 | 0.157779 |
Target: 5'- cAGAUGUcGCC-CUCGCCCgugUGCCCUg -3' miRNA: 3'- -UCUACGaCGGcGGGUGGGa--GCGGGGa -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 9708 | 0.68 | 0.145435 |
Target: 5'- uGAUGUUGCuCGCCgGCUgcaacagCGCCCCg -3' miRNA: 3'- uCUACGACG-GCGGgUGGga-----GCGGGGa -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 13188 | 0.68 | 0.14152 |
Target: 5'- cGGUGCagGCCGCCCAgggcaaCggcagCGCCCCg -3' miRNA: 3'- uCUACGa-CGGCGGGUgg----Ga----GCGGGGa -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 28177 | 0.68 | 0.157779 |
Target: 5'- cAGGUGUcGCCGCaCUugCCgCGCCCg- -3' miRNA: 3'- -UCUACGaCGGCG-GGugGGaGCGGGga -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 5494 | 0.69 | 0.130348 |
Target: 5'- cGAUGgUGCCGCUgaCGCCgaugccgaucuuCUCGCCCUg -3' miRNA: 3'- uCUACgACGGCGG--GUGG------------GAGCGGGGa -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 16621 | 0.69 | 0.130348 |
Target: 5'- -cGUGCgaccgGCUGUCCAUCCUCGCCa-- -3' miRNA: 3'- ucUACGa----CGGCGGGUGGGAGCGGgga -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 12796 | 0.7 | 0.107379 |
Target: 5'- aGGcgGaaaucGCCGCCCG-CCUCGCCCUg -3' miRNA: 3'- -UCuaCga---CGGCGGGUgGGAGCGGGGa -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 4485 | 0.71 | 0.090771 |
Target: 5'- cGAUGUUGCgGCCguCCguggUCGCCCCUu -3' miRNA: 3'- uCUACGACGgCGGguGGg---AGCGGGGA- -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 26616 | 0.72 | 0.070362 |
Target: 5'- -aAUGCgccGCCGCCCGCCUggGCCUCg -3' miRNA: 3'- ucUACGa--CGGCGGGUGGGagCGGGGa -5' |
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11949 | 5' | -63.8 | NC_003278.1 | + | 4230 | 1.06 | 0.000121 |
Target: 5'- cAGAUGCUGCCGCCCACCCUCGCCCCUc -3' miRNA: 3'- -UCUACGACGGCGGGUGGGAGCGGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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