miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11950 3' -58.1 NC_003278.1 + 28481 0.66 0.411697
Target:  5'- cCAGAc-GCCGCGCGGgcUGucGCCCGGc -3'
miRNA:   3'- -GUCUacCGGCGCGUCauGC--UGGGCUu -5'
11950 3' -58.1 NC_003278.1 + 10808 0.66 0.392863
Target:  5'- -uGGUGaacCCGCGCGaugcGUGCGAUCCGAc -3'
miRNA:   3'- guCUACc--GGCGCGU----CAUGCUGGGCUu -5'
11950 3' -58.1 NC_003278.1 + 4308 0.67 0.374598
Target:  5'- ----gGGCCGCGCGc-GCGuCCCGAAc -3'
miRNA:   3'- gucuaCCGGCGCGUcaUGCuGGGCUU- -5'
11950 3' -58.1 NC_003278.1 + 20131 0.67 0.365684
Target:  5'- cCAGGUGGCCGaCGUAcugacUGCGgcguucACCCGGAa -3'
miRNA:   3'- -GUCUACCGGC-GCGUc----AUGC------UGGGCUU- -5'
11950 3' -58.1 NC_003278.1 + 33971 0.67 0.356917
Target:  5'- cCAGGUGGUCGaUGCuGU-CGGCCUGGc -3'
miRNA:   3'- -GUCUACCGGC-GCGuCAuGCUGGGCUu -5'
11950 3' -58.1 NC_003278.1 + 20221 0.67 0.33983
Target:  5'- ----cGGCCGCG-AGUACGGCCaGAGc -3'
miRNA:   3'- gucuaCCGGCGCgUCAUGCUGGgCUU- -5'
11950 3' -58.1 NC_003278.1 + 20510 0.67 0.33983
Target:  5'- aAGAUcGcGCCGCGCuGUACGuuGCCCa-- -3'
miRNA:   3'- gUCUA-C-CGGCGCGuCAUGC--UGGGcuu -5'
11950 3' -58.1 NC_003278.1 + 19436 0.67 0.331511
Target:  5'- ----cGGCCaGCGCGGUGCuGACCUGc- -3'
miRNA:   3'- gucuaCCGG-CGCGUCAUG-CUGGGCuu -5'
11950 3' -58.1 NC_003278.1 + 29245 0.67 0.331511
Target:  5'- uCGGcGUGGCCGC-CGGUGCGAUCUu-- -3'
miRNA:   3'- -GUC-UACCGGCGcGUCAUGCUGGGcuu -5'
11950 3' -58.1 NC_003278.1 + 18929 0.68 0.307461
Target:  5'- gCAGGUgcaGGCCGCGCAGUuCG-CCagaGGAg -3'
miRNA:   3'- -GUCUA---CCGGCGCGUCAuGCuGGg--CUU- -5'
11950 3' -58.1 NC_003278.1 + 30503 0.69 0.249919
Target:  5'- aAGGUGGCCGaCGCGGcaacccugcGCGACCUGc- -3'
miRNA:   3'- gUCUACCGGC-GCGUCa--------UGCUGGGCuu -5'
11950 3' -58.1 NC_003278.1 + 4467 1.05 0.000508
Target:  5'- gCAGAUGGCCGCGCAGUACGACCCGAAc -3'
miRNA:   3'- -GUCUACCGGCGCGUCAUGCUGGGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.