miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11951 3' -58.1 NC_003278.1 + 4594 0.66 0.404321
Target:  5'- ----gCGCCGAacucaccaGCCGGCcAGGCCc- -3'
miRNA:   3'- uucaaGCGGCUg-------UGGCCGuUCCGGau -5'
11951 3' -58.1 NC_003278.1 + 8060 0.66 0.398617
Target:  5'- ---cUgGCUGGcCACCGGCAcgaagcaggaccugaAGGCCUGg -3'
miRNA:   3'- uucaAgCGGCU-GUGGCCGU---------------UCCGGAU- -5'
11951 3' -58.1 NC_003278.1 + 12210 0.66 0.394843
Target:  5'- -----aGaCCGuCACCGGCAAGGUCa- -3'
miRNA:   3'- uucaagC-GGCuGUGGCCGUUCCGGau -5'
11951 3' -58.1 NC_003278.1 + 31775 0.66 0.376323
Target:  5'- gAAG-UCGCgGAgGCCGGCcGGGUCc- -3'
miRNA:   3'- -UUCaAGCGgCUgUGGCCGuUCCGGau -5'
11951 3' -58.1 NC_003278.1 + 18753 0.66 0.358399
Target:  5'- ----cCGCCGGCcggGCCGGCGggaagggauuacAGGCCg- -3'
miRNA:   3'- uucaaGCGGCUG---UGGCCGU------------UCCGGau -5'
11951 3' -58.1 NC_003278.1 + 31849 0.67 0.349664
Target:  5'- gGAGgaaaucCGCCGcgcCGCCGGCGGGcGCCg- -3'
miRNA:   3'- -UUCaa----GCGGCu--GUGGCCGUUC-CGGau -5'
11951 3' -58.1 NC_003278.1 + 6650 0.67 0.349664
Target:  5'- aGAGaUCGCCGAgGCCGcGCucAAGGCa-- -3'
miRNA:   3'- -UUCaAGCGGCUgUGGC-CG--UUCCGgau -5'
11951 3' -58.1 NC_003278.1 + 32336 0.67 0.341081
Target:  5'- ---aUCGCCgGGCAgCGGCAugcGGCCg- -3'
miRNA:   3'- uucaAGCGG-CUGUgGCCGUu--CCGGau -5'
11951 3' -58.1 NC_003278.1 + 22121 0.67 0.341081
Target:  5'- cAGaUgGCUGACACCGGgucGGCCUGg -3'
miRNA:   3'- uUCaAgCGGCUGUGGCCguuCCGGAU- -5'
11951 3' -58.1 NC_003278.1 + 31805 0.67 0.332652
Target:  5'- cAGggUGCCcggGACACCGGCcAGGCgCUc -3'
miRNA:   3'- uUCaaGCGG---CUGUGGCCGuUCCG-GAu -5'
11951 3' -58.1 NC_003278.1 + 21730 0.67 0.324377
Target:  5'- cGGggCGCUGGCGCCGaGCAccaGGGCa-- -3'
miRNA:   3'- uUCaaGCGGCUGUGGC-CGU---UCCGgau -5'
11951 3' -58.1 NC_003278.1 + 30718 0.67 0.308289
Target:  5'- cGGcgUUGCCG-CGCCGGUcAGGCUUGg -3'
miRNA:   3'- uUCa-AGCGGCuGUGGCCGuUCCGGAU- -5'
11951 3' -58.1 NC_003278.1 + 33291 0.68 0.285311
Target:  5'- aGGGUggUGCCcaucACGCCGGCGAuGGCCUc -3'
miRNA:   3'- -UUCAa-GCGGc---UGUGGCCGUU-CCGGAu -5'
11951 3' -58.1 NC_003278.1 + 21425 0.68 0.270046
Target:  5'- -uGUUCGCCGACcUgGGCGGguucaccauggccGGCCUGg -3'
miRNA:   3'- uuCAAGCGGCUGuGgCCGUU-------------CCGGAU- -5'
11951 3' -58.1 NC_003278.1 + 21466 0.69 0.263707
Target:  5'- cAGggCcUCGGCGCCGGCcAGGCCg- -3'
miRNA:   3'- uUCaaGcGGCUGUGGCCGuUCCGGau -5'
11951 3' -58.1 NC_003278.1 + 17258 0.7 0.206825
Target:  5'- -cGUcagCGCCGAuggcaaguaCACCGGCAugaAGGCCUu -3'
miRNA:   3'- uuCAa--GCGGCU---------GUGGCCGU---UCCGGAu -5'
11951 3' -58.1 NC_003278.1 + 19749 0.7 0.195717
Target:  5'- ---cUgGCCGGCACCGGCAuGGCg-- -3'
miRNA:   3'- uucaAgCGGCUGUGGCCGUuCCGgau -5'
11951 3' -58.1 NC_003278.1 + 32353 0.71 0.190362
Target:  5'- uGGGUUCGCCuGGCACUGGUgcGaGCCg- -3'
miRNA:   3'- -UUCAAGCGG-CUGUGGCCGuuC-CGGau -5'
11951 3' -58.1 NC_003278.1 + 29635 0.72 0.139501
Target:  5'- -cGUUCcUCGAggcCACCGGCGAGGCCg- -3'
miRNA:   3'- uuCAAGcGGCU---GUGGCCGUUCCGGau -5'
11951 3' -58.1 NC_003278.1 + 29710 0.73 0.131707
Target:  5'- uGGaUUUGCCGGCACCGGCcucgccgguGGCCUc -3'
miRNA:   3'- uUC-AAGCGGCUGUGGCCGuu-------CCGGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.