miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11951 5' -61.4 NC_003278.1 + 3001 0.67 0.266385
Target:  5'- aCCUGGCgAUCACCGaacggccgcaGCgcgaacggcuuguagUCCUCCGaCCa -3'
miRNA:   3'- cGGACCGgUAGUGGC----------UG---------------AGGGGGC-GG- -5'
11951 5' -61.4 NC_003278.1 + 20171 0.67 0.263719
Target:  5'- aCCUGGuCCAUUuucucuGCCGgaaUCCCCauCGCCg -3'
miRNA:   3'- cGGACC-GGUAG------UGGCug-AGGGG--GCGG- -5'
11951 5' -61.4 NC_003278.1 + 13618 0.67 0.257147
Target:  5'- cGCCUGGCC---GCCGAagCCCUgGCg -3'
miRNA:   3'- -CGGACCGGuagUGGCUgaGGGGgCGg -5'
11951 5' -61.4 NC_003278.1 + 13341 0.67 0.257147
Target:  5'- aCCUGGCCAcCAUCGGCccggagUCCgaGCCg -3'
miRNA:   3'- cGGACCGGUaGUGGCUGa-----GGGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 14687 0.67 0.250711
Target:  5'- cGCCgaccaGGCCGUUGCCGGCcagCaCCuuGCg -3'
miRNA:   3'- -CGGa----CCGGUAGUGGCUGa--G-GGggCGg -5'
11951 5' -61.4 NC_003278.1 + 9050 0.68 0.244407
Target:  5'- cGCCUGGCgAacgcUCGCCagaucGACgauaCCgCCGCCc -3'
miRNA:   3'- -CGGACCGgU----AGUGG-----CUGa---GGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 13231 0.68 0.238236
Target:  5'- -gCUGGCCAUCGUCGACgCCUaccucaacgaCGCCg -3'
miRNA:   3'- cgGACCGGUAGUGGCUGaGGGg---------GCGG- -5'
11951 5' -61.4 NC_003278.1 + 34387 0.68 0.232196
Target:  5'- cGCCggGGCCAguaGCUGGacCUUCCUCGUCg -3'
miRNA:   3'- -CGGa-CCGGUag-UGGCU--GAGGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 17157 0.68 0.226285
Target:  5'- aGCCUGcaaGCaAUCGCCGACcaggCCaacgCCGCCa -3'
miRNA:   3'- -CGGAC---CGgUAGUGGCUGa---GGg---GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 5019 0.68 0.220502
Target:  5'- aCCUGGCCGaacUCggcuuggguGCgGGCUUCCuuGCCc -3'
miRNA:   3'- cGGACCGGU---AG---------UGgCUGAGGGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 20831 0.68 0.220502
Target:  5'- aGCCUuGCCAucacccUCGCCGGCaUUCUCgGCCc -3'
miRNA:   3'- -CGGAcCGGU------AGUGGCUG-AGGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 6565 0.69 0.209314
Target:  5'- cCCUGGaCAUCGCCGACUacgUgCUCGCa -3'
miRNA:   3'- cGGACCgGUAGUGGCUGA---GgGGGCGg -5'
11951 5' -61.4 NC_003278.1 + 8440 0.69 0.208768
Target:  5'- uCCaUGGCCAUCugCGgccuggaaauccuGCUCUaCCGCCc -3'
miRNA:   3'- cGG-ACCGGUAGugGC-------------UGAGGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 3057 0.69 0.19862
Target:  5'- gGCCguucGGUgAUCGCCagguguggcugGGCUaugaCCCCGCCg -3'
miRNA:   3'- -CGGa---CCGgUAGUGG-----------CUGAg---GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 8365 0.69 0.197577
Target:  5'- cGCCUGGUCugcuaccagcgCugCGGCgcccgCUUCCGCCg -3'
miRNA:   3'- -CGGACCGGua---------GugGCUGa----GGGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 29787 0.69 0.188404
Target:  5'- cGCCuUGGUCAUCuuCGACgggUCCUgGCCu -3'
miRNA:   3'- -CGG-ACCGGUAGugGCUGa--GGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 14019 0.69 0.183472
Target:  5'- cGCCUGGaCCugcgcaucaCGCCGGacaUCCuggCCCGCCa -3'
miRNA:   3'- -CGGACC-GGua-------GUGGCUg--AGG---GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 21584 0.7 0.178654
Target:  5'- aGCCUgacGGCCcgCGCUGACcaggCCUUgGCCg -3'
miRNA:   3'- -CGGA---CCGGuaGUGGCUGa---GGGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 19432 0.7 0.178654
Target:  5'- aGCagaUGGCCGcCGCCGGCaaccCCaCCCGCg -3'
miRNA:   3'- -CGg--ACCGGUaGUGGCUGa---GG-GGGCGg -5'
11951 5' -61.4 NC_003278.1 + 9854 0.7 0.173949
Target:  5'- gGCCUGGCCuggGCCGAgUgCgCCGCg -3'
miRNA:   3'- -CGGACCGGuagUGGCUgAgGgGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.