miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11952 3' -54.7 NC_003278.1 + 8417 0.66 0.608119
Target:  5'- uGCUCGCCAGccuGCUCGGCGcauccauggccaucuGCGgccugGAAa -3'
miRNA:   3'- uCGAGCGGUU---CGAGUUGC---------------CGCa----CUUg -5'
11952 3' -54.7 NC_003278.1 + 13661 0.66 0.603514
Target:  5'- cGGCcaggCGCuCAAGUUCggUGGCGUu-GCg -3'
miRNA:   3'- -UCGa---GCG-GUUCGAGuuGCCGCAcuUG- -5'
11952 3' -54.7 NC_003278.1 + 33214 0.66 0.603514
Target:  5'- cGGCUgCgGCCGAGgccaUCGcCGGCGUGAuggGCa -3'
miRNA:   3'- -UCGA-G-CGGUUCg---AGUuGCCGCACU---UG- -5'
11952 3' -54.7 NC_003278.1 + 30812 0.66 0.603514
Target:  5'- uGCcgaUCGCCcAGCgcgaCAGCGGCcaGAGCg -3'
miRNA:   3'- uCG---AGCGGuUCGa---GUUGCCGcaCUUG- -5'
11952 3' -54.7 NC_003278.1 + 20238 0.66 0.602364
Target:  5'- cAGCgagUCGCCGAGCaugcggaugUCGACGuuguuccGgGUGAACg -3'
miRNA:   3'- -UCG---AGCGGUUCG---------AGUUGC-------CgCACUUG- -5'
11952 3' -54.7 NC_003278.1 + 7194 0.66 0.592023
Target:  5'- aGGUUCGCgcgcacaugcuCGAGCUCGAUGGUGggccaGAAg -3'
miRNA:   3'- -UCGAGCG-----------GUUCGAGUUGCCGCa----CUUg -5'
11952 3' -54.7 NC_003278.1 + 15239 0.66 0.592023
Target:  5'- cGGCUCGaCAAcGUUCGACGguaGCGcGAACg -3'
miRNA:   3'- -UCGAGCgGUU-CGAGUUGC---CGCaCUUG- -5'
11952 3' -54.7 NC_003278.1 + 18913 0.66 0.569161
Target:  5'- cAGUUCGCCAgaggagGGCUUGcGCaGgGUGAGCg -3'
miRNA:   3'- -UCGAGCGGU------UCGAGU-UGcCgCACUUG- -5'
11952 3' -54.7 NC_003278.1 + 5319 0.66 0.569161
Target:  5'- gAGCUgCGCCAGGUa----GGCGUcGAACu -3'
miRNA:   3'- -UCGA-GCGGUUCGaguugCCGCA-CUUG- -5'
11952 3' -54.7 NC_003278.1 + 9379 0.66 0.55781
Target:  5'- aGGCUCGCgCGAGCUUggUGuCGUaGAGg -3'
miRNA:   3'- -UCGAGCG-GUUCGAGuuGCcGCA-CUUg -5'
11952 3' -54.7 NC_003278.1 + 4999 0.67 0.534196
Target:  5'- aAGCgaUCGCCGAGCaCAGCcGCGaccugggUGAGCa -3'
miRNA:   3'- -UCG--AGCGGUUCGaGUUGcCGC-------ACUUG- -5'
11952 3' -54.7 NC_003278.1 + 9097 0.67 0.524183
Target:  5'- cGUUCGCCAGgcgcugguGCUCGGCGGUGccgccGGCa -3'
miRNA:   3'- uCGAGCGGUU--------CGAGUUGCCGCac---UUG- -5'
11952 3' -54.7 NC_003278.1 + 3163 0.67 0.513143
Target:  5'- cAGUUCGUCGA---CGACGGCGcGAGCa -3'
miRNA:   3'- -UCGAGCGGUUcgaGUUGCCGCaCUUG- -5'
11952 3' -54.7 NC_003278.1 + 21827 0.67 0.513143
Target:  5'- cGCUCaGCCAAcuGCUgGAUGaGCGcGAACg -3'
miRNA:   3'- uCGAG-CGGUU--CGAgUUGC-CGCaCUUG- -5'
11952 3' -54.7 NC_003278.1 + 14285 0.67 0.50111
Target:  5'- cGuCUCGCCGGGCgcgcCGcCGGCGUcaccgauGAGCa -3'
miRNA:   3'- uC-GAGCGGUUCGa---GUuGCCGCA-------CUUG- -5'
11952 3' -54.7 NC_003278.1 + 18583 0.68 0.480627
Target:  5'- aAGCUCGUCG---UCAACGGCGagGAAg -3'
miRNA:   3'- -UCGAGCGGUucgAGUUGCCGCa-CUUg -5'
11952 3' -54.7 NC_003278.1 + 10353 0.68 0.470012
Target:  5'- uGCUCGCCAacGGCgagCuGCuGGCcgaGUGGACg -3'
miRNA:   3'- uCGAGCGGU--UCGa--GuUG-CCG---CACUUG- -5'
11952 3' -54.7 NC_003278.1 + 17625 0.68 0.459517
Target:  5'- --gUCGCCG---UCAACGGCGUGAccgGCa -3'
miRNA:   3'- ucgAGCGGUucgAGUUGCCGCACU---UG- -5'
11952 3' -54.7 NC_003278.1 + 5388 0.69 0.417852
Target:  5'- cAGCUucUGCUGgacacucGGCUCGACGGCGaaggucUGGACg -3'
miRNA:   3'- -UCGA--GCGGU-------UCGAGUUGCCGC------ACUUG- -5'
11952 3' -54.7 NC_003278.1 + 2298 0.69 0.39934
Target:  5'- gGGCUgGCCAAG-UCggUGGgGUcGAGCg -3'
miRNA:   3'- -UCGAgCGGUUCgAGuuGCCgCA-CUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.