miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11952 3' -54.7 NC_003278.1 + 21827 0.67 0.513143
Target:  5'- cGCUCaGCCAAcuGCUgGAUGaGCGcGAACg -3'
miRNA:   3'- uCGAG-CGGUU--CGAgUUGC-CGCaCUUG- -5'
11952 3' -54.7 NC_003278.1 + 23038 0.7 0.344444
Target:  5'- uGCagGCCGaccgcgacAGCUaCGACGGCGUGcGCg -3'
miRNA:   3'- uCGagCGGU--------UCGA-GUUGCCGCACuUG- -5'
11952 3' -54.7 NC_003278.1 + 30812 0.66 0.603514
Target:  5'- uGCcgaUCGCCcAGCgcgaCAGCGGCcaGAGCg -3'
miRNA:   3'- uCG---AGCGGuUCGa---GUUGCCGcaCUUG- -5'
11952 3' -54.7 NC_003278.1 + 33214 0.66 0.603514
Target:  5'- cGGCUgCgGCCGAGgccaUCGcCGGCGUGAuggGCa -3'
miRNA:   3'- -UCGA-G-CGGUUCg---AGUuGCCGCACU---UG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.