miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11953 5' -55.5 NC_003278.1 + 13693 0.67 0.480131
Target:  5'- uGCCcgGUCGCCcuucuGCCGUACCug-GCCu -3'
miRNA:   3'- gUGG--UAGCGGu----CGGCAUGGcuaUGGu -5'
11953 5' -55.5 NC_003278.1 + 32433 0.67 0.480131
Target:  5'- gGCUG-CGCCAGUCGcUGCCGGcucgcaccagUGCCAg -3'
miRNA:   3'- gUGGUaGCGGUCGGC-AUGGCU----------AUGGU- -5'
11953 5' -55.5 NC_003278.1 + 31771 0.67 0.480131
Target:  5'- uCGCgGagGCCGGCCGgguccacgUCGAUGCCAc -3'
miRNA:   3'- -GUGgUagCGGUCGGCau------GGCUAUGGU- -5'
11953 5' -55.5 NC_003278.1 + 6118 0.67 0.479081
Target:  5'- gGCgGUCGCC-GCCGcUACCugaaggaGGUACCGg -3'
miRNA:   3'- gUGgUAGCGGuCGGC-AUGG-------CUAUGGU- -5'
11953 5' -55.5 NC_003278.1 + 21836 0.67 0.476986
Target:  5'- uGCCcgCGCCGGCCuggauggugauguaGUaagugucgccGCCGAUACUg -3'
miRNA:   3'- gUGGuaGCGGUCGG--------------CA----------UGGCUAUGGu -5'
11953 5' -55.5 NC_003278.1 + 20289 0.68 0.469686
Target:  5'- gACCGUCuccagGCUcuGGCCGUACuCGcgGCCGa -3'
miRNA:   3'- gUGGUAG-----CGG--UCGGCAUG-GCuaUGGU- -5'
11953 5' -55.5 NC_003278.1 + 31858 0.68 0.469686
Target:  5'- cCGCCGcgcCGCCGGCgGgcgccgACCgGAUGCCGu -3'
miRNA:   3'- -GUGGUa--GCGGUCGgCa-----UGG-CUAUGGU- -5'
11953 5' -55.5 NC_003278.1 + 21601 0.68 0.469686
Target:  5'- cCACCGacguUCGaCCAGCCGcUGCUG--GCCAu -3'
miRNA:   3'- -GUGGU----AGC-GGUCGGC-AUGGCuaUGGU- -5'
11953 5' -55.5 NC_003278.1 + 23245 0.68 0.459359
Target:  5'- uCGCCAgggGCCGGCCGgACCuGAUcCCGg -3'
miRNA:   3'- -GUGGUag-CGGUCGGCaUGG-CUAuGGU- -5'
11953 5' -55.5 NC_003278.1 + 9944 0.68 0.459359
Target:  5'- gCAUCugcUCGCC-GCCGUGCCGGaACuCAg -3'
miRNA:   3'- -GUGGu--AGCGGuCGGCAUGGCUaUG-GU- -5'
11953 5' -55.5 NC_003278.1 + 4812 0.68 0.459359
Target:  5'- gACCcUCGCCAGCCGcaagACCaAUcCCGa -3'
miRNA:   3'- gUGGuAGCGGUCGGCa---UGGcUAuGGU- -5'
11953 5' -55.5 NC_003278.1 + 15227 0.68 0.459359
Target:  5'- cCGCCGUUG-CAGCCuGaccaauaccauUGCCGGUACCGc -3'
miRNA:   3'- -GUGGUAGCgGUCGG-C-----------AUGGCUAUGGU- -5'
11953 5' -55.5 NC_003278.1 + 19077 0.68 0.44309
Target:  5'- aCGCCAUgGCCgaccuGGCCGUgacguuucacugggcGCCGG-ACCAu -3'
miRNA:   3'- -GUGGUAgCGG-----UCGGCA---------------UGGCUaUGGU- -5'
11953 5' -55.5 NC_003278.1 + 14694 0.68 0.439074
Target:  5'- uCGCCAcCGCCgaccaGGCCGuUGCCG--GCCAg -3'
miRNA:   3'- -GUGGUaGCGG-----UCGGC-AUGGCuaUGGU- -5'
11953 5' -55.5 NC_003278.1 + 4749 0.68 0.439074
Target:  5'- gGCCAUcaccgacuccccCGCCAGCCuggGUACCGAgGCg- -3'
miRNA:   3'- gUGGUA------------GCGGUCGG---CAUGGCUaUGgu -5'
11953 5' -55.5 NC_003278.1 + 8033 0.68 0.428138
Target:  5'- gGCCcaugauggCGCCGGCCGUGgCGGUgguggugaggucaGCCAu -3'
miRNA:   3'- gUGGua------GCGGUCGGCAUgGCUA-------------UGGU- -5'
11953 5' -55.5 NC_003278.1 + 22491 0.69 0.419311
Target:  5'- uGCCGUCGaCCgugAGCCGgaacACCGGcACCGg -3'
miRNA:   3'- gUGGUAGC-GG---UCGGCa---UGGCUaUGGU- -5'
11953 5' -55.5 NC_003278.1 + 22067 0.69 0.409634
Target:  5'- aACUGgcgCGCCGGCUGggcACCGAUGCg- -3'
miRNA:   3'- gUGGUa--GCGGUCGGCa--UGGCUAUGgu -5'
11953 5' -55.5 NC_003278.1 + 33203 0.69 0.400096
Target:  5'- uGCgGUucCGCCGGCUGcgGCCGAgGCCAu -3'
miRNA:   3'- gUGgUA--GCGGUCGGCa-UGGCUaUGGU- -5'
11953 5' -55.5 NC_003278.1 + 32756 0.7 0.345946
Target:  5'- gGCCGUC-CCAGUCGgugACCGGguacuUGCCGa -3'
miRNA:   3'- gUGGUAGcGGUCGGCa--UGGCU-----AUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.