miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11954 5' -54.2 NC_003278.1 + 32670 0.66 0.670838
Target:  5'- -aCGCCgaUGAUGGcgcccgaggugUCGGUc-CAGCGGCg -3'
miRNA:   3'- ugGCGG--ACUACU-----------AGCCGaaGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 29789 0.66 0.670838
Target:  5'- cCCGCCU--UGGUCauCUUCGACGGg -3'
miRNA:   3'- uGGCGGAcuACUAGccGAAGUUGCCg -5'
11954 5' -54.2 NC_003278.1 + 22936 0.66 0.670838
Target:  5'- gGCUGCCUGcucUGccugCGGCcggUGGCGGCa -3'
miRNA:   3'- -UGGCGGACu--ACua--GCCGaa-GUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 5054 0.66 0.659436
Target:  5'- gGCUGUgCUcGgcGAUC-GCUUCGACGGCc -3'
miRNA:   3'- -UGGCG-GA-CuaCUAGcCGAAGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 21212 0.66 0.648007
Target:  5'- uCgGCCUGAUGuaccgCGcCUUCGcCGGCg -3'
miRNA:   3'- uGgCGGACUACua---GCcGAAGUuGCCG- -5'
11954 5' -54.2 NC_003278.1 + 5024 0.66 0.648007
Target:  5'- cGCCGaCCUGGccGAacUCGGCUUgGguGCGGg -3'
miRNA:   3'- -UGGC-GGACUa-CU--AGCCGAAgU--UGCCg -5'
11954 5' -54.2 NC_003278.1 + 12756 0.66 0.625113
Target:  5'- cACCGCgUG-UGGUggcggcaacUGGCUgaggUCGAUGGCg -3'
miRNA:   3'- -UGGCGgACuACUA---------GCCGA----AGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 20889 0.66 0.625113
Target:  5'- uGCCGgCgagGGUGAUggcaaGGCUgcCAACGGUa -3'
miRNA:   3'- -UGGCgGa--CUACUAg----CCGAa-GUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 14598 0.66 0.625113
Target:  5'- uGCCGUCgucGAUGAUCaG-UUCGACGuGCu -3'
miRNA:   3'- -UGGCGGa--CUACUAGcCgAAGUUGC-CG- -5'
11954 5' -54.2 NC_003278.1 + 26569 0.66 0.625113
Target:  5'- -gCGCCaGGUGGUCaGCgcgaUCAuCGGCg -3'
miRNA:   3'- ugGCGGaCUACUAGcCGa---AGUuGCCG- -5'
11954 5' -54.2 NC_003278.1 + 6352 0.66 0.613671
Target:  5'- cGCCGCCUcuUGAgCGGCggUCA-CGcGCa -3'
miRNA:   3'- -UGGCGGAcuACUaGCCGa-AGUuGC-CG- -5'
11954 5' -54.2 NC_003278.1 + 2640 0.67 0.579489
Target:  5'- -gCGCCUGGgccaGGUCGGUc-CAGcCGGCg -3'
miRNA:   3'- ugGCGGACUa---CUAGCCGaaGUU-GCCG- -5'
11954 5' -54.2 NC_003278.1 + 22426 0.67 0.579489
Target:  5'- -gUGCC-GGUGuucCGGCUcacggUCGACGGCa -3'
miRNA:   3'- ugGCGGaCUACua-GCCGA-----AGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 31987 0.67 0.579489
Target:  5'- cGCUGCauCUGGcUGAUgGGCgaggCAugGGCu -3'
miRNA:   3'- -UGGCG--GACU-ACUAgCCGaa--GUugCCG- -5'
11954 5' -54.2 NC_003278.1 + 3002 0.67 0.568177
Target:  5'- cACCGCggguCUGGUGGUggUGGCgccucCGGCGGUa -3'
miRNA:   3'- -UGGCG----GACUACUA--GCCGaa---GUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 9021 0.68 0.545729
Target:  5'- uGCgGCCaGuUGGUCGGCggugaccugaUCGugGGCg -3'
miRNA:   3'- -UGgCGGaCuACUAGCCGa---------AGUugCCG- -5'
11954 5' -54.2 NC_003278.1 + 20961 0.68 0.534611
Target:  5'- gGCCgGCCUGuUGAUCGGCc-CGcUGGUg -3'
miRNA:   3'- -UGG-CGGACuACUAGCCGaaGUuGCCG- -5'
11954 5' -54.2 NC_003278.1 + 15158 0.68 0.523574
Target:  5'- uACCGgCaaUGGuauUGGUCaGGCUgCAACGGCg -3'
miRNA:   3'- -UGGCgG--ACU---ACUAG-CCGAaGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 12190 0.69 0.49102
Target:  5'- uGCCGCCgucgcUGAUGAguUCGGUgguacCGcCGGCg -3'
miRNA:   3'- -UGGCGG-----ACUACU--AGCCGaa---GUuGCCG- -5'
11954 5' -54.2 NC_003278.1 + 33276 0.69 0.480377
Target:  5'- -aCGCCggcGAUGGccUCGGCcgCAGcCGGCg -3'
miRNA:   3'- ugGCGGa--CUACU--AGCCGaaGUU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.