miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11954 5' -54.2 NC_003278.1 + 21307 0.69 0.469848
Target:  5'- --gGCCUGGUGAaCGGCcugcUCGcCGGCu -3'
miRNA:   3'- uggCGGACUACUaGCCGa---AGUuGCCG- -5'
11954 5' -54.2 NC_003278.1 + 19012 0.69 0.469848
Target:  5'- gGCCucggGCUcggUGAUGGUCGGCUggcugaugcGCGGCa -3'
miRNA:   3'- -UGG----CGG---ACUACUAGCCGAagu------UGCCG- -5'
11954 5' -54.2 NC_003278.1 + 14819 0.69 0.469848
Target:  5'- aGCCGCCcagcGUGGUCGGgUUgcugcCGGCGGUg -3'
miRNA:   3'- -UGGCGGac--UACUAGCCgAA-----GUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 12836 0.69 0.459437
Target:  5'- uCCGCCUGcUGAUCcuccggccagaGGCU--GAUGGCg -3'
miRNA:   3'- uGGCGGACuACUAG-----------CCGAagUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 26891 0.69 0.459437
Target:  5'- -gCGCCUGAUGG-CGGUggCGACgccccuGGCg -3'
miRNA:   3'- ugGCGGACUACUaGCCGaaGUUG------CCG- -5'
11954 5' -54.2 NC_003278.1 + 7448 0.69 0.458403
Target:  5'- uGCCGCUggUGGUGGUgucguaccagCGGUagcgcucggccacUUCGGCGGCg -3'
miRNA:   3'- -UGGCGG--ACUACUA----------GCCG-------------AAGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 22709 0.69 0.449151
Target:  5'- cGCCGCU--GUGcUCGGUUucgUCGACGGUg -3'
miRNA:   3'- -UGGCGGacUACuAGCCGA---AGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 5415 0.69 0.438993
Target:  5'- aGCUGCagggcGAgaaGAUCGGCaucggcgUCAGCGGCa -3'
miRNA:   3'- -UGGCGga---CUa--CUAGCCGa------AGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 9702 0.69 0.438993
Target:  5'- uCUGCCUGAUGuugcucgcCGGCUgCAACaGCg -3'
miRNA:   3'- uGGCGGACUACua------GCCGAaGUUGcCG- -5'
11954 5' -54.2 NC_003278.1 + 18863 0.7 0.428967
Target:  5'- cGCCGCgCU--UGAUCGGCUggUCGAgGGg -3'
miRNA:   3'- -UGGCG-GAcuACUAGCCGA--AGUUgCCg -5'
11954 5' -54.2 NC_003278.1 + 20859 0.7 0.428967
Target:  5'- uCgGCCcGAUGAUCGcaguccGCUUCAugcuCGGCa -3'
miRNA:   3'- uGgCGGaCUACUAGC------CGAAGUu---GCCG- -5'
11954 5' -54.2 NC_003278.1 + 15881 0.7 0.413211
Target:  5'- aACCGCCUcGAUGAUCuaucagaccuaucguGGCUacgccgcCGGCGGUc -3'
miRNA:   3'- -UGGCGGA-CUACUAG---------------CCGAa------GUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 33843 0.71 0.380945
Target:  5'- uGCCGCCag-----CGGCUUCcGCGGCu -3'
miRNA:   3'- -UGGCGGacuacuaGCCGAAGuUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 17294 0.71 0.37269
Target:  5'- cGCCGCC-GAUGAccgcgcuauuggucgCGGCUUCAuccucgccCGGCu -3'
miRNA:   3'- -UGGCGGaCUACUa--------------GCCGAAGUu-------GCCG- -5'
11954 5' -54.2 NC_003278.1 + 8993 0.71 0.368157
Target:  5'- cCCGCgCUGGUGAacccucgcccgggCGGCUaugcCGGCGGCa -3'
miRNA:   3'- uGGCG-GACUACUa------------GCCGAa---GUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 19554 0.71 0.353907
Target:  5'- uGCUGCUUGAgGAaacCGGCUUCAcggAUGGCc -3'
miRNA:   3'- -UGGCGGACUaCUa--GCCGAAGU---UGCCG- -5'
11954 5' -54.2 NC_003278.1 + 7693 0.71 0.353907
Target:  5'- aGCgCGCCUGggGAgcgacCGGUUUCuaccucGCGGCa -3'
miRNA:   3'- -UG-GCGGACuaCUa----GCCGAAGu-----UGCCG- -5'
11954 5' -54.2 NC_003278.1 + 21495 0.71 0.336648
Target:  5'- gGCCgGCCaUGGUGAacccgcccaggUCGGCgaacacccgCGACGGCg -3'
miRNA:   3'- -UGG-CGG-ACUACU-----------AGCCGaa-------GUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 4476 0.73 0.28861
Target:  5'- gGCCGUCc-GUGGUCGcccCUUCGACGGCg -3'
miRNA:   3'- -UGGCGGacUACUAGCc--GAAGUUGCCG- -5'
11954 5' -54.2 NC_003278.1 + 9983 0.73 0.28861
Target:  5'- gACCGCCUGGUGAUauucauCgaCAACGGCc -3'
miRNA:   3'- -UGGCGGACUACUAgcc---GaaGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.