miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11955 3' -57.7 NC_003278.1 + 21871 0.66 0.429125
Target:  5'- cGCCugcgcGCCCGC--CUGCAGGACcggGAGu -3'
miRNA:   3'- -CGGu----UGGGCGacGACGUCCUGca-CUU- -5'
11955 3' -57.7 NC_003278.1 + 6378 0.66 0.409634
Target:  5'- uCCAugCC-CUGgUGCGGGGCaGUGGc -3'
miRNA:   3'- cGGUugGGcGACgACGUCCUG-CACUu -5'
11955 3' -57.7 NC_003278.1 + 18893 0.66 0.400097
Target:  5'- uGCuCGACCUGCUGCaGUucGAUGUGGc -3'
miRNA:   3'- -CG-GUUGGGCGACGaCGucCUGCACUu -5'
11955 3' -57.7 NC_003278.1 + 34416 0.67 0.363399
Target:  5'- aGCuUGGCCUGCUGCUGCAGuGCGc--- -3'
miRNA:   3'- -CG-GUUGGGCGACGACGUCcUGCacuu -5'
11955 3' -57.7 NC_003278.1 + 22878 0.67 0.354597
Target:  5'- cGCCAACCUGCUGacacGCcuGGGCGaGGAc -3'
miRNA:   3'- -CGGUUGGGCGACga--CGu-CCUGCaCUU- -5'
11955 3' -57.7 NC_003278.1 + 7284 0.67 0.354597
Target:  5'- cGCCAgGCCCGCaGCUcGCGGuuGACGcUGAu -3'
miRNA:   3'- -CGGU-UGGGCGaCGA-CGUC--CUGC-ACUu -5'
11955 3' -57.7 NC_003278.1 + 9842 0.67 0.337447
Target:  5'- cGCUGACUCcagGCUGCAGGGCGUc-- -3'
miRNA:   3'- -CGGUUGGGcgaCGACGUCCUGCAcuu -5'
11955 3' -57.7 NC_003278.1 + 21477 0.68 0.329102
Target:  5'- cGCCGGCCagGCcgGCccGCuGGGCGUGAu -3'
miRNA:   3'- -CGGUUGGg-CGa-CGa-CGuCCUGCACUu -5'
11955 3' -57.7 NC_003278.1 + 13180 0.68 0.329102
Target:  5'- cGCCGACgcgaCCGUcgGCgGCGcGGGCGUGGAa -3'
miRNA:   3'- -CGGUUG----GGCGa-CGaCGU-CCUGCACUU- -5'
11955 3' -57.7 NC_003278.1 + 29111 0.68 0.312871
Target:  5'- cGCC-GCCgGCuUGCUGCAGGGCc---- -3'
miRNA:   3'- -CGGuUGGgCG-ACGACGUCCUGcacuu -5'
11955 3' -57.7 NC_003278.1 + 3254 0.68 0.297254
Target:  5'- cGCaCAgucGCCC-UUGCUGCAGGGCGUc-- -3'
miRNA:   3'- -CG-GU---UGGGcGACGACGUCCUGCAcuu -5'
11955 3' -57.7 NC_003278.1 + 18635 0.7 0.22821
Target:  5'- cGCCGuugacgacgaGCuuGUguaGCUGCAGGugGUGGu -3'
miRNA:   3'- -CGGU----------UGggCGa--CGACGUCCugCACUu -5'
11955 3' -57.7 NC_003278.1 + 28450 0.7 0.216143
Target:  5'- uGCCcACCCaGCgucgacCUGCAGGAgGUGAAg -3'
miRNA:   3'- -CGGuUGGG-CGac----GACGUCCUgCACUU- -5'
11955 3' -57.7 NC_003278.1 + 19596 0.75 0.106432
Target:  5'- cGCguGCgCaGUUGCUGCAGGGCGUGGc -3'
miRNA:   3'- -CGguUGgG-CGACGACGUCCUGCACUu -5'
11955 3' -57.7 NC_003278.1 + 5707 1.08 0.000319
Target:  5'- cGCCAACCCGCUGCUGCAGGACGUGAAc -3'
miRNA:   3'- -CGGUUGGGCGACGACGUCCUGCACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.