miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11955 5' -52.1 NC_003278.1 + 6472 0.66 0.745101
Target:  5'- uUUCCGGC-GUGCUGCAggccgGCAaggGCGCcCa -3'
miRNA:   3'- cAAGGUCGuCAUGGCGU-----UGU---UGCGaG- -5'
11955 5' -52.1 NC_003278.1 + 6079 0.66 0.745101
Target:  5'- --aCCGGCGGcagGCCGCccauGCGCUUc -3'
miRNA:   3'- caaGGUCGUCa--UGGCGuuguUGCGAG- -5'
11955 5' -52.1 NC_003278.1 + 15159 0.66 0.733882
Target:  5'- --aCCGGCaauGGUauuggucagGCUGCAACGGCGgUCa -3'
miRNA:   3'- caaGGUCG---UCA---------UGGCGUUGUUGCgAG- -5'
11955 5' -52.1 NC_003278.1 + 19791 0.66 0.733882
Target:  5'- --aCCGGCGacaaGCUGCGGCAgAUGCUCg -3'
miRNA:   3'- caaGGUCGUca--UGGCGUUGU-UGCGAG- -5'
11955 5' -52.1 NC_003278.1 + 9436 0.66 0.722546
Target:  5'- -cUCCuGUgGGUACaGCAGCAGCGCaUCg -3'
miRNA:   3'- caAGGuCG-UCAUGgCGUUGUUGCG-AG- -5'
11955 5' -52.1 NC_003278.1 + 30265 0.66 0.722546
Target:  5'- --cCUGGUGGUGCCGCuguccgAGCAccagcucgccuGCGCUCa -3'
miRNA:   3'- caaGGUCGUCAUGGCG------UUGU-----------UGCGAG- -5'
11955 5' -52.1 NC_003278.1 + 9078 0.66 0.722546
Target:  5'- --cUCGGCGGUGCCGcCGGCAuagcCGCcCg -3'
miRNA:   3'- caaGGUCGUCAUGGC-GUUGUu---GCGaG- -5'
11955 5' -52.1 NC_003278.1 + 29378 0.66 0.711107
Target:  5'- cGUUCUgggcgacguGGCGGUG-CGCGGCGGCGUgaUCg -3'
miRNA:   3'- -CAAGG---------UCGUCAUgGCGUUGUUGCG--AG- -5'
11955 5' -52.1 NC_003278.1 + 13271 0.66 0.711107
Target:  5'- --gCCAGCAGguCCGCcGgGGCGCUg -3'
miRNA:   3'- caaGGUCGUCauGGCGuUgUUGCGAg -5'
11955 5' -52.1 NC_003278.1 + 11959 0.66 0.711107
Target:  5'- cGUUCCAuucGCGGUcggcgccggcCCGCGGCGAUGCcCa -3'
miRNA:   3'- -CAAGGU---CGUCAu---------GGCGUUGUUGCGaG- -5'
11955 5' -52.1 NC_003278.1 + 28662 0.66 0.699579
Target:  5'- aGUUUCGGCAGcuUGCCGCcACGG-GCUg -3'
miRNA:   3'- -CAAGGUCGUC--AUGGCGuUGUUgCGAg -5'
11955 5' -52.1 NC_003278.1 + 25500 0.66 0.699579
Target:  5'- --aCCAuCAGUccgACCGCAGCGGcCGUUCc -3'
miRNA:   3'- caaGGUcGUCA---UGGCGUUGUU-GCGAG- -5'
11955 5' -52.1 NC_003278.1 + 19429 0.66 0.699579
Target:  5'- --cUCAGCAGaugGCCGCcgccGGCAaccccacccgcGCGCUCa -3'
miRNA:   3'- caaGGUCGUCa--UGGCG----UUGU-----------UGCGAG- -5'
11955 5' -52.1 NC_003278.1 + 23035 0.66 0.698422
Target:  5'- --aCCuGCAGgccgACCGCGACAgcuacgacggcguGCGCg- -3'
miRNA:   3'- caaGGuCGUCa---UGGCGUUGU-------------UGCGag -5'
11955 5' -52.1 NC_003278.1 + 27947 0.67 0.687976
Target:  5'- -gUCCGGCAGaUGCCaGCAAUgugugGGCGgUCc -3'
miRNA:   3'- caAGGUCGUC-AUGG-CGUUG-----UUGCgAG- -5'
11955 5' -52.1 NC_003278.1 + 30010 0.67 0.676311
Target:  5'- cGUUCUGGCucaucaccagGGUGCCGCGGaaggGGgGCUCg -3'
miRNA:   3'- -CAAGGUCG----------UCAUGGCGUUg---UUgCGAG- -5'
11955 5' -52.1 NC_003278.1 + 1629 0.67 0.664599
Target:  5'- -aUCCgcagcugaugggGGUGGUGCCGCAG-AACGCUg -3'
miRNA:   3'- caAGG------------UCGUCAUGGCGUUgUUGCGAg -5'
11955 5' -52.1 NC_003278.1 + 30723 0.67 0.664599
Target:  5'- aGUUCCGGCGuUGCCGCGcCGgucAgGCUUg -3'
miRNA:   3'- -CAAGGUCGUcAUGGCGUuGU---UgCGAG- -5'
11955 5' -52.1 NC_003278.1 + 2441 0.67 0.652852
Target:  5'- ---gCGGCGGUgGCUGCGACGuuUGCUCa -3'
miRNA:   3'- caagGUCGUCA-UGGCGUUGUu-GCGAG- -5'
11955 5' -52.1 NC_003278.1 + 12119 0.67 0.639906
Target:  5'- --gCCGGCGGUACCaccgaacucaucaGCGACGGCGg-- -3'
miRNA:   3'- caaGGUCGUCAUGG-------------CGUUGUUGCgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.