Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11956 | 3' | -60 | NC_003278.1 | + | 11879 | 0.66 | 0.323531 |
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Target: 5'- -aCGcGCUGCGcGGCaUGGUCCaccGCGGCGAu -3' miRNA: 3'- gaGC-CGGCGC-UCG-ACCAGG---UGCUGUU- -5' |
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| 11956 | 3' | -60 | NC_003278.1 | + | 5747 | 0.66 | 0.315627 |
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Target: 5'- gUUGGCgGCGcGGUUGGUgguagCCGCGGCGc -3' miRNA: 3'- gAGCCGgCGC-UCGACCA-----GGUGCUGUu -5' |
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| 11956 | 3' | -60 | NC_003278.1 | + | 2961 | 0.67 | 0.285474 |
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Target: 5'- -gCGGCaaguucCGCGuGCUGGagcgccaucaauUCCGCGGCAAg -3' miRNA: 3'- gaGCCG------GCGCuCGACC------------AGGUGCUGUU- -5' |
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| 11956 | 3' | -60 | NC_003278.1 | + | 6024 | 0.67 | 0.2783 |
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Target: 5'- uCUCGGuuGCcGGCUGGUCCuuGuuCAc -3' miRNA: 3'- -GAGCCggCGcUCGACCAGGugCu-GUu -5' |
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| 11956 | 3' | -60 | NC_003278.1 | + | 20219 | 0.68 | 0.238879 |
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Target: 5'- gUCGGCCGCGAGUacggccagagccUGGagacggucaccaccgCCACGGCc- -3' miRNA: 3'- gAGCCGGCGCUCG------------ACCa--------------GGUGCUGuu -5' |
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| 11956 | 3' | -60 | NC_003278.1 | + | 32832 | 0.69 | 0.214317 |
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Target: 5'- --gGGCCaCGguGGCgcgGGUCCGCGACAGc -3' miRNA: 3'- gagCCGGcGC--UCGa--CCAGGUGCUGUU- -5' |
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| 11956 | 3' | -60 | NC_003278.1 | + | 1603 | 0.75 | 0.082839 |
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Target: 5'- --aGGCCgGCGAGCUGGUCguCGCGGCu- -3' miRNA: 3'- gagCCGG-CGCUCGACCAG--GUGCUGuu -5' |
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| 11956 | 3' | -60 | NC_003278.1 | + | 5923 | 1.06 | 0.000297 |
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Target: 5'- cCUCGGCCGCGAGCUGGUCCACGACAAg -3' miRNA: 3'- -GAGCCGGCGCUCGACCAGGUGCUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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