miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11956 5' -54.9 NC_003278.1 + 5961 1.11 0.000443
Target:  5'- uGGUGAACAAGGACCAGCCGGCAACCGa -3'
miRNA:   3'- -CCACUUGUUCCUGGUCGGCCGUUGGC- -5'
11956 5' -54.9 NC_003278.1 + 3365 0.74 0.218538
Target:  5'- ---cAACAAGGGCaAGCCGGCcGCCGa -3'
miRNA:   3'- ccacUUGUUCCUGgUCGGCCGuUGGC- -5'
11956 5' -54.9 NC_003278.1 + 15445 0.73 0.250009
Target:  5'- uGGUGucGCAGGGACUGGCCacGGCAgugcauACCa -3'
miRNA:   3'- -CCACu-UGUUCCUGGUCGG--CCGU------UGGc -5'
11956 5' -54.9 NC_003278.1 + 14615 0.73 0.256736
Target:  5'- aGG-GAcGCAAGGuGCUGGCCGGCAACgGc -3'
miRNA:   3'- -CCaCU-UGUUCC-UGGUCGGCCGUUGgC- -5'
11956 5' -54.9 NC_003278.1 + 17977 0.73 0.26361
Target:  5'- cGUGAacgACAAGGACacgcucaaGGCCGGCAAgCu -3'
miRNA:   3'- cCACU---UGUUCCUGg-------UCGGCCGUUgGc -5'
11956 5' -54.9 NC_003278.1 + 19508 0.73 0.270633
Target:  5'- gGGUGAGCGcgcgggugGGGuuGCCGG-CGGCGGCCa -3'
miRNA:   3'- -CCACUUGU--------UCC--UGGUCgGCCGUUGGc -5'
11956 5' -54.9 NC_003278.1 + 31702 0.72 0.285129
Target:  5'- uGGUGGcaucgACGuGGAcCCGGCCGGCcuCCGc -3'
miRNA:   3'- -CCACU-----UGUuCCU-GGUCGGCCGuuGGC- -5'
11956 5' -54.9 NC_003278.1 + 31821 0.72 0.285129
Target:  5'- gGGUGAAC-AGGuCCAGCaGGguGCCc -3'
miRNA:   3'- -CCACUUGuUCCuGGUCGgCCguUGGc -5'
11956 5' -54.9 NC_003278.1 + 29722 0.72 0.285129
Target:  5'- aGGUGAucaGCGuGGAUuuGCCGGCA-CCGg -3'
miRNA:   3'- -CCACU---UGUuCCUGguCGGCCGUuGGC- -5'
11956 5' -54.9 NC_003278.1 + 19180 0.71 0.315943
Target:  5'- cGGUGAGCGAGaGCCGGuccauaugguCCGGCGcCCa -3'
miRNA:   3'- -CCACUUGUUCcUGGUC----------GGCCGUuGGc -5'
11956 5' -54.9 NC_003278.1 + 28181 0.71 0.324029
Target:  5'- --gGAGCAAGcGAUC-GCCGGCcACCGa -3'
miRNA:   3'- ccaCUUGUUC-CUGGuCGGCCGuUGGC- -5'
11956 5' -54.9 NC_003278.1 + 9782 0.71 0.340661
Target:  5'- cGGUGAuaGCGGGGcGCuguugCAGCCGGCGAgCa -3'
miRNA:   3'- -CCACU--UGUUCC-UG-----GUCGGCCGUUgGc -5'
11956 5' -54.9 NC_003278.1 + 32768 0.71 0.349205
Target:  5'- cGGUGccGGCugGGccgucCCAGUCGGUGACCGg -3'
miRNA:   3'- -CCAC--UUGuuCCu----GGUCGGCCGUUGGC- -5'
11956 5' -54.9 NC_003278.1 + 21003 0.7 0.375743
Target:  5'- cGUGAGCAucgcgcuguGGGGCCuGGCCGcCAACCc -3'
miRNA:   3'- cCACUUGU---------UCCUGG-UCGGCcGUUGGc -5'
11956 5' -54.9 NC_003278.1 + 17206 0.7 0.384887
Target:  5'- gGGUGAagccggGCGAGGAUgaAGCCG-CGACCa -3'
miRNA:   3'- -CCACU------UGUUCCUGg-UCGGCcGUUGGc -5'
11956 5' -54.9 NC_003278.1 + 31933 0.7 0.384887
Target:  5'- -aUGAACAcGGcauCCGGUCGGCGcccGCCGg -3'
miRNA:   3'- ccACUUGUuCCu--GGUCGGCCGU---UGGC- -5'
11956 5' -54.9 NC_003278.1 + 9000 0.7 0.394177
Target:  5'- uGGUGAACccucgcccGGGcGGCUAuGCCGGCGgcACCGc -3'
miRNA:   3'- -CCACUUG--------UUC-CUGGU-CGGCCGU--UGGC- -5'
11956 5' -54.9 NC_003278.1 + 9083 0.69 0.413187
Target:  5'- uGGUGcuCGGcGGugCcGCCGGCAuaGCCGc -3'
miRNA:   3'- -CCACuuGUU-CCugGuCGGCCGU--UGGC- -5'
11956 5' -54.9 NC_003278.1 + 20880 0.69 0.413187
Target:  5'- gGGUGAugGCAAGGcuGCCAa-CGGUAGCCa -3'
miRNA:   3'- -CCACU--UGUUCC--UGGUcgGCCGUUGGc -5'
11956 5' -54.9 NC_003278.1 + 32702 0.69 0.413187
Target:  5'- cGGUcaccGACuGGGAcggcCCAGCCGGCA-CCGu -3'
miRNA:   3'- -CCAc---UUGuUCCU----GGUCGGCCGUuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.