miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11957 5' -52.2 NC_003278.1 + 27179 0.66 0.781809
Target:  5'- aGCCGGuGAAGGuggcGCCGCA--GAGcGCg -3'
miRNA:   3'- -UGGCCuCUUCU----UGGCGUagCUCuUGa -5'
11957 5' -52.2 NC_003278.1 + 23490 0.66 0.771252
Target:  5'- -aCGGAGAAGAccaucACCGCGg-GAGAcCa -3'
miRNA:   3'- ugGCCUCUUCU-----UGGCGUagCUCUuGa -5'
11957 5' -52.2 NC_003278.1 + 12160 0.66 0.738676
Target:  5'- cGCCGGcgGGAAGAACUGCgcgcagGUgGuGGGCUg -3'
miRNA:   3'- -UGGCC--UCUUCUUGGCG------UAgCuCUUGA- -5'
11957 5' -52.2 NC_003278.1 + 16769 0.67 0.727561
Target:  5'- gGCCGGAGuccgguGAGuuuCCGC-UCGcAGAACa -3'
miRNA:   3'- -UGGCCUC------UUCuu-GGCGuAGC-UCUUGa -5'
11957 5' -52.2 NC_003278.1 + 15053 0.67 0.693635
Target:  5'- cGCCGGAGuu-GGCCaGCGUC-AGGACUc -3'
miRNA:   3'- -UGGCCUCuucUUGG-CGUAGcUCUUGA- -5'
11957 5' -52.2 NC_003278.1 + 29903 0.68 0.647535
Target:  5'- gACCGGccAGAAGAccGCCGgCAaCGAGAcCUa -3'
miRNA:   3'- -UGGCC--UCUUCU--UGGC-GUaGCUCUuGA- -5'
11957 5' -52.2 NC_003278.1 + 32237 0.69 0.576984
Target:  5'- aGCCGGAGAAGAagagccuGCgCGCcGUCGGcGACa -3'
miRNA:   3'- -UGGCCUCUUCU-------UG-GCG-UAGCUcUUGa -5'
11957 5' -52.2 NC_003278.1 + 6146 1.08 0.001388
Target:  5'- uACCGGAGAAGAACCGCAUCGAGAACUa -3'
miRNA:   3'- -UGGCCUCUUCUUGGCGUAGCUCUUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.