Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11957 | 5' | -52.2 | NC_003278.1 | + | 6146 | 1.08 | 0.001388 |
Target: 5'- uACCGGAGAAGAACCGCAUCGAGAACUa -3' miRNA: 3'- -UGGCCUCUUCUUGGCGUAGCUCUUGA- -5' |
|||||||
11957 | 5' | -52.2 | NC_003278.1 | + | 32237 | 0.69 | 0.576984 |
Target: 5'- aGCCGGAGAAGAagagccuGCgCGCcGUCGGcGACa -3' miRNA: 3'- -UGGCCUCUUCU-------UG-GCG-UAGCUcUUGa -5' |
|||||||
11957 | 5' | -52.2 | NC_003278.1 | + | 29903 | 0.68 | 0.647535 |
Target: 5'- gACCGGccAGAAGAccGCCGgCAaCGAGAcCUa -3' miRNA: 3'- -UGGCC--UCUUCU--UGGC-GUaGCUCUuGA- -5' |
|||||||
11957 | 5' | -52.2 | NC_003278.1 | + | 15053 | 0.67 | 0.693635 |
Target: 5'- cGCCGGAGuu-GGCCaGCGUC-AGGACUc -3' miRNA: 3'- -UGGCCUCuucUUGG-CGUAGcUCUUGA- -5' |
|||||||
11957 | 5' | -52.2 | NC_003278.1 | + | 16769 | 0.67 | 0.727561 |
Target: 5'- gGCCGGAGuccgguGAGuuuCCGC-UCGcAGAACa -3' miRNA: 3'- -UGGCCUC------UUCuu-GGCGuAGC-UCUUGa -5' |
|||||||
11957 | 5' | -52.2 | NC_003278.1 | + | 12160 | 0.66 | 0.738676 |
Target: 5'- cGCCGGcgGGAAGAACUGCgcgcagGUgGuGGGCUg -3' miRNA: 3'- -UGGCC--UCUUCUUGGCG------UAgCuCUUGA- -5' |
|||||||
11957 | 5' | -52.2 | NC_003278.1 | + | 23490 | 0.66 | 0.771252 |
Target: 5'- -aCGGAGAAGAccaucACCGCGg-GAGAcCa -3' miRNA: 3'- ugGCCUCUUCU-----UGGCGUagCUCUuGa -5' |
|||||||
11957 | 5' | -52.2 | NC_003278.1 | + | 27179 | 0.66 | 0.781809 |
Target: 5'- aGCCGGuGAAGGuggcGCCGCA--GAGcGCg -3' miRNA: 3'- -UGGCCuCUUCU----UGGCGUagCUCuUGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home