Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 145421 | 0.66 | 0.99136 |
|
Target: 5'- uCGuCGUCCGcCGGGGUgcCGUUAAC-ACa -3' miRNA: 3'- uGC-GCAGGCuGCUCCA--GUAAUUGcUG- -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 155443 | 0.66 | 0.99136 |
|
Target: 5'- uCGUGUCgGAuaCGAGG-CGUacACGACa -3' miRNA: 3'- uGCGCAGgCU--GCUCCaGUAauUGCUG- -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 7611 | 0.66 | 0.99136 |
|
Target: 5'- -aGCGUCCuACGAGaUCGUcGACaGACg -3' miRNA: 3'- ugCGCAGGcUGCUCcAGUAaUUG-CUG- -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 94752 | 0.67 | 0.981873 |
|
Target: 5'- -aGuCGUgCGAUGAGGaCAUUaAACGACu -3' miRNA: 3'- ugC-GCAgGCUGCUCCaGUAA-UUGCUG- -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 34948 | 0.67 | 0.981249 |
|
Target: 5'- uACGCGUCCGcgaaaaguuguacgGCGAuaGGUCGgcaGAUGAUc -3' miRNA: 3'- -UGCGCAGGC--------------UGCU--CCAGUaa-UUGCUG- -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 100446 | 0.68 | 0.972174 |
|
Target: 5'- uUGCGUCgauCGACGAacGUCGUUuGCGGCg -3' miRNA: 3'- uGCGCAG---GCUGCUc-CAGUAAuUGCUG- -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 134210 | 0.68 | 0.959197 |
|
Target: 5'- cGCGCGUCCGGCGu--UCGU--ACGAa -3' miRNA: 3'- -UGCGCAGGCUGCuccAGUAauUGCUg -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 68217 | 0.69 | 0.955393 |
|
Target: 5'- aACGUGaUCCGuuCGAGGUUAUUccCGAUg -3' miRNA: 3'- -UGCGC-AGGCu-GCUCCAGUAAuuGCUG- -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 25949 | 0.7 | 0.927554 |
|
Target: 5'- uACGUGUCaaauACGGGGUCAUucuUAACGGg -3' miRNA: 3'- -UGCGCAGgc--UGCUCCAGUA---AUUGCUg -5' |
|||||||
| 1196 | 3' | -51.9 | NC_001132.2 | + | 90407 | 0.77 | 0.592219 |
|
Target: 5'- gACGCGUCCGACaucuuucuaaaAGGUCAUUAcACGAUu -3' miRNA: 3'- -UGCGCAGGCUGc----------UCCAGUAAU-UGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home