miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11960 5' -59.3 NC_003278.1 + 23417 0.67 0.361594
Target:  5'- ---gGCUGGUGAUguaaccgcCGUCGGCGCUg -3'
miRNA:   3'- gcuaCGGCCGCUAau------GCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 31686 0.67 0.361594
Target:  5'- uGAaGCCuGCG---GCGCCGcCGCCCa -3'
miRNA:   3'- gCUaCGGcCGCuaaUGCGGCcGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 27032 0.67 0.356501
Target:  5'- cCGGUGCagGGUGAUcacUGCGCCGacuucggcaugucguGCGgCCa -3'
miRNA:   3'- -GCUACGg-CCGCUA---AUGCGGC---------------CGCgGG- -5'
11960 5' -59.3 NC_003278.1 + 23235 0.67 0.353133
Target:  5'- uCGgcGCgGGCGGc-GCGCagGGCGCUCu -3'
miRNA:   3'- -GCuaCGgCCGCUaaUGCGg-CCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 26566 0.67 0.353133
Target:  5'- gCGgcGCCaGGUGGUcaGCGCgaucauCGGCGCCUa -3'
miRNA:   3'- -GCuaCGG-CCGCUAa-UGCG------GCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 18482 0.67 0.351458
Target:  5'- uGA-GCCGGCGAagcgcagcaugACGCCGuuggcacugacuGCGCCg -3'
miRNA:   3'- gCUaCGGCCGCUaa---------UGCGGC------------CGCGGg -5'
11960 5' -59.3 NC_003278.1 + 7836 0.67 0.336634
Target:  5'- uCGGUcacGCCGGCGG-UGCGaCCGuaGUGCCg -3'
miRNA:   3'- -GCUA---CGGCCGCUaAUGC-GGC--CGCGGg -5'
11960 5' -59.3 NC_003278.1 + 21931 0.67 0.336634
Target:  5'- cCGGuccUGCaGGCGGgcGCGCaGGCGCgCCg -3'
miRNA:   3'- -GCU---ACGgCCGCUaaUGCGgCCGCG-GG- -5'
11960 5' -59.3 NC_003278.1 + 14280 0.67 0.336634
Target:  5'- ---cGCCGGgCGcgc-CGCCGGCGUCa -3'
miRNA:   3'- gcuaCGGCC-GCuaauGCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 31935 0.67 0.336634
Target:  5'- uGAUGaacaCGGCauccg-GUCGGCGCCCg -3'
miRNA:   3'- gCUACg---GCCGcuaaugCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 12953 0.67 0.336634
Target:  5'- aGcAUGuuGGCGAgagccgccucgUUGaccCGCUGGCGCCa -3'
miRNA:   3'- gC-UACggCCGCU-----------AAU---GCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 26733 0.67 0.328598
Target:  5'- ---cGCUGaGCGGUUugcUGCCGGCGUUCu -3'
miRNA:   3'- gcuaCGGC-CGCUAAu--GCGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 16794 0.68 0.320705
Target:  5'- aGuUGgCGGCGG-UACGCCugcaGCGCCUg -3'
miRNA:   3'- gCuACgGCCGCUaAUGCGGc---CGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 22730 0.68 0.320705
Target:  5'- gGAUGCUGaGC----ACGuCCGGCGCgCCg -3'
miRNA:   3'- gCUACGGC-CGcuaaUGC-GGCCGCG-GG- -5'
11960 5' -59.3 NC_003278.1 + 20347 0.68 0.312954
Target:  5'- aGGUGCCGGCcAUgcUGCCcuGGaCGCCa -3'
miRNA:   3'- gCUACGGCCGcUAauGCGG--CC-GCGGg -5'
11960 5' -59.3 NC_003278.1 + 10365 0.68 0.312954
Target:  5'- gCGAgcUGCUGGcCGAguggACGCCGccgaaGCCCa -3'
miRNA:   3'- -GCU--ACGGCC-GCUaa--UGCGGCcg---CGGG- -5'
11960 5' -59.3 NC_003278.1 + 14049 0.68 0.309894
Target:  5'- aGGUGUCGGCuGAcuggGCGCacgucgucgagcaGGCGCUCg -3'
miRNA:   3'- gCUACGGCCG-CUaa--UGCGg------------CCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 1957 0.68 0.297881
Target:  5'- -aGUGCCGGaguGGUucUGCGCCcuacagaGCGCCCu -3'
miRNA:   3'- gcUACGGCCg--CUA--AUGCGGc------CGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 20182 0.68 0.29274
Target:  5'- cCGcAUGCuCGGCGAcucgcugaaguacucCGCCGGCGUCg -3'
miRNA:   3'- -GC-UACG-GCCGCUaau------------GCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 22459 0.68 0.289834
Target:  5'- gGAUaGCCGGCGuc-GCGCugcaacuggucgaCGGCGCUg -3'
miRNA:   3'- gCUA-CGGCCGCuaaUGCG-------------GCCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.