miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11961 3' -57.6 NC_003278.1 + 29334 0.66 0.507594
Target:  5'- aUCUGGUCAagcUGCgCG-CCGCUgccggugaagaUCGCa- -3'
miRNA:   3'- -GGACCAGU---ACGgGCuGGCGA-----------AGCGcg -5'
11961 3' -57.6 NC_003278.1 + 29580 0.66 0.507594
Target:  5'- uUCUGGUUcgGCUCG-CUGUU-CGCGg -3'
miRNA:   3'- -GGACCAGuaCGGGCuGGCGAaGCGCg -5'
11961 3' -57.6 NC_003278.1 + 20064 0.66 0.466407
Target:  5'- gCCgGG-CAUGgCgCCGAggauCUGCUUCGCGUu -3'
miRNA:   3'- -GGaCCaGUAC-G-GGCU----GGCGAAGCGCG- -5'
11961 3' -57.6 NC_003278.1 + 32915 0.66 0.466407
Target:  5'- aCUGGcCuGUGCCaugggcacuggUGACCGCUUgUGCGUg -3'
miRNA:   3'- gGACCaG-UACGG-----------GCUGGCGAA-GCGCG- -5'
11961 3' -57.6 NC_003278.1 + 18311 0.67 0.44647
Target:  5'- gCCcGGUCAaGgCCGACCuagGCUUCGaCGa -3'
miRNA:   3'- -GGaCCAGUaCgGGCUGG---CGAAGC-GCg -5'
11961 3' -57.6 NC_003278.1 + 32131 0.67 0.427017
Target:  5'- aUCUGGUCcagcagGUG-CCGGCCGCggcUCGC-Ca -3'
miRNA:   3'- -GGACCAG------UACgGGCUGGCGa--AGCGcG- -5'
11961 3' -57.6 NC_003278.1 + 30081 0.67 0.426058
Target:  5'- aCCUGGgCGUGCUCGAggucagccacuucCUGCUgauggccaucCGCGCc -3'
miRNA:   3'- -GGACCaGUACGGGCU-------------GGCGAa---------GCGCG- -5'
11961 3' -57.6 NC_003278.1 + 5689 0.67 0.408076
Target:  5'- --cGGUCGaggGCCUGGCgcuugaggauCGCgUCGCGCa -3'
miRNA:   3'- ggaCCAGUa--CGGGCUG----------GCGaAGCGCG- -5'
11961 3' -57.6 NC_003278.1 + 8366 0.68 0.388763
Target:  5'- gCCUGGUC-UGCUaccagcgcugcggCGcCCGCUUC-CGCc -3'
miRNA:   3'- -GGACCAGuACGG-------------GCuGGCGAAGcGCG- -5'
11961 3' -57.6 NC_003278.1 + 6736 0.68 0.371814
Target:  5'- aCCaGGccgaCAUGCCCGACgaaGCc-CGCGCg -3'
miRNA:   3'- -GGaCCa---GUACGGGCUGg--CGaaGCGCG- -5'
11961 3' -57.6 NC_003278.1 + 28361 0.69 0.337809
Target:  5'- aCUGGgaacgccuaaUCGaucGCCCGAgCCGCUUCG-GCa -3'
miRNA:   3'- gGACC----------AGUa--CGGGCU-GGCGAAGCgCG- -5'
11961 3' -57.6 NC_003278.1 + 28085 0.69 0.329669
Target:  5'- cCCUGGUCGacaGCCCcugguucauCCGCUgcggGCGCg -3'
miRNA:   3'- -GGACCAGUa--CGGGcu-------GGCGAag--CGCG- -5'
11961 3' -57.6 NC_003278.1 + 6830 0.69 0.313827
Target:  5'- -gUGG-CAUGgCCGGCggcgagguagaGCUUCGCGCg -3'
miRNA:   3'- ggACCaGUACgGGCUGg----------CGAAGCGCG- -5'
11961 3' -57.6 NC_003278.1 + 21343 0.7 0.269787
Target:  5'- cCCUGGacgaUCAUGUugCCGAagUCGCUgaagCGCGCc -3'
miRNA:   3'- -GGACC----AGUACG--GGCU--GGCGAa---GCGCG- -5'
11961 3' -57.6 NC_003278.1 + 17555 0.7 0.269787
Target:  5'- uCCacGUCAggaaGUCCGGCCagaucaccaugGCUUCGCGCg -3'
miRNA:   3'- -GGacCAGUa---CGGGCUGG-----------CGAAGCGCG- -5'
11961 3' -57.6 NC_003278.1 + 29793 0.71 0.234533
Target:  5'- -aUGGUCAUGCucgaggCCGACCGCagcgacaacagcCGCGCc -3'
miRNA:   3'- ggACCAGUACG------GGCUGGCGaa----------GCGCG- -5'
11961 3' -57.6 NC_003278.1 + 34424 0.72 0.202144
Target:  5'- gUCUGGUUAgcuugGCCUG-CUGCUgcagugCGCGCa -3'
miRNA:   3'- -GGACCAGUa----CGGGCuGGCGAa-----GCGCG- -5'
11961 3' -57.6 NC_003278.1 + 20544 0.73 0.18847
Target:  5'- gCUGGUCAccgcguacUGCCCGGCgauguccuugaagauCGCgcCGCGCu -3'
miRNA:   3'- gGACCAGU--------ACGGGCUG---------------GCGaaGCGCG- -5'
11961 3' -57.6 NC_003278.1 + 28235 0.75 0.133944
Target:  5'- aCCUGGccCAUGCCCG-CgGCUUCgaccugGCGCu -3'
miRNA:   3'- -GGACCa-GUACGGGCuGgCGAAG------CGCG- -5'
11961 3' -57.6 NC_003278.1 + 6598 1.14 0.00016
Target:  5'- aCCUGGUCAUGCCCGACCGCUUCGCGCg -3'
miRNA:   3'- -GGACCAGUACGGGCUGGCGAAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.