miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11963 3' -51 NC_003278.1 + 10133 0.66 0.843735
Target:  5'- ---cUGGUGAACCaGUcGGAucuaCUGGCCa -3'
miRNA:   3'- gucuACCACUUGGaUAcCCU----GACUGG- -5'
11963 3' -51 NC_003278.1 + 15444 0.66 0.843735
Target:  5'- ---uUGGUGucGCa---GGGACUGGCCa -3'
miRNA:   3'- gucuACCACu-UGgauaCCCUGACUGG- -5'
11963 3' -51 NC_003278.1 + 18608 0.66 0.809005
Target:  5'- gCAGGUGGUGGugauCUUGUGcucggugucuucgccGGGCUGGgCg -3'
miRNA:   3'- -GUCUACCACUu---GGAUAC---------------CCUGACUgG- -5'
11963 3' -51 NC_003278.1 + 9582 0.66 0.804968
Target:  5'- -uGAUGGUGccGGCCUGgcgggaaagcUGGGcgucGCUGGCUu -3'
miRNA:   3'- guCUACCAC--UUGGAU----------ACCC----UGACUGG- -5'
11963 3' -51 NC_003278.1 + 4540 0.67 0.793702
Target:  5'- cCGGcUGGUGAguucggcGCCUAUGGcGacguGCUGGCg -3'
miRNA:   3'- -GUCuACCACU-------UGGAUACC-C----UGACUGg -5'
11963 3' -51 NC_003278.1 + 7169 0.68 0.72302
Target:  5'- -cGAUGGUGGGCCagaagggaucgcuguUGaugugcccggcUGGGACcgGGCCg -3'
miRNA:   3'- guCUACCACUUGG---------------AU-----------ACCCUGa-CUGG- -5'
11963 3' -51 NC_003278.1 + 33971 0.71 0.533401
Target:  5'- cCAGGUGGUcGAugCUGUcGGcCUGGCUg -3'
miRNA:   3'- -GUCUACCA-CUugGAUAcCCuGACUGG- -5'
11963 3' -51 NC_003278.1 + 2328 0.72 0.503214
Target:  5'- -cGGUGGUacGAGCCgccgcugucuauggaGGGGCUGGCCa -3'
miRNA:   3'- guCUACCA--CUUGGaua------------CCCUGACUGG- -5'
11963 3' -51 NC_003278.1 + 21749 0.72 0.467373
Target:  5'- -cGAUGGUGAugGCCUGcgccgGGGcGCUGGCg -3'
miRNA:   3'- guCUACCACU--UGGAUa----CCC-UGACUGg -5'
11963 3' -51 NC_003278.1 + 7905 1.13 0.000821
Target:  5'- gCAGAUGGUGAACCUAUGGGACUGACCa -3'
miRNA:   3'- -GUCUACCACUUGGAUACCCUGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.