Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 33244 | 0.69 | 0.308689 |
Target: 5'- uGGGcACCACCCUGUuguUGGCUgaggcuggcgaGACCUUc -3' miRNA: 3'- -CCU-UGGUGGGGCGu--ACCGA-----------CUGGAGu -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 31260 | 0.66 | 0.451893 |
Target: 5'- cGGAGCaGCCUgGC--GGCgGGCCUCGg -3' miRNA: 3'- -CCUUGgUGGGgCGuaCCGaCUGGAGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 30161 | 0.74 | 0.145472 |
Target: 5'- cGGAugGCCAUCa-GCAggaagUGGCUGACCUCGa -3' miRNA: 3'- -CCU--UGGUGGggCGU-----ACCGACUGGAGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 29752 | 0.75 | 0.122716 |
Target: 5'- cGGGCCugCgCCGC-UGGCUGACC-CAg -3' miRNA: 3'- cCUUGGugG-GGCGuACCGACUGGaGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 29509 | 0.73 | 0.176841 |
Target: 5'- aGGAcuACCGCCCCGaGUGGCUGgACUg-- -3' miRNA: 3'- -CCU--UGGUGGGGCgUACCGAC-UGGagu -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 23202 | 0.7 | 0.251184 |
Target: 5'- uGGAACCGCCUacaGCGUGGCaGcgccACgCUCAg -3' miRNA: 3'- -CCUUGGUGGGg--CGUACCGaC----UG-GAGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 17797 | 0.66 | 0.482567 |
Target: 5'- aGAACUACaCCCGCAccgcccagGuGCUGGCCg-- -3' miRNA: 3'- cCUUGGUG-GGGCGUa-------C-CGACUGGagu -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 17783 | 0.66 | 0.493015 |
Target: 5'- cGGAAUC-CCCCuuccuGCAccagGGUggUGACCUCGu -3' miRNA: 3'- -CCUUGGuGGGG-----CGUa---CCG--ACUGGAGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 15763 | 0.67 | 0.393932 |
Target: 5'- aGGcACCGCCCagauCGCAgcggacccaGGCUGACCa-- -3' miRNA: 3'- -CCuUGGUGGG----GCGUa--------CCGACUGGagu -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 15529 | 0.66 | 0.472228 |
Target: 5'- cGAAUgGCCCa--GUGGCUGGCCg-- -3' miRNA: 3'- cCUUGgUGGGgcgUACCGACUGGagu -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 14229 | 0.67 | 0.432046 |
Target: 5'- cGGcGGCgCGCCCgGCGagacGGCUGACCcCAu -3' miRNA: 3'- -CC-UUG-GUGGGgCGUa---CCGACUGGaGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 12488 | 0.66 | 0.472228 |
Target: 5'- aGGucuauGCCGCCaCCGcCAUGGC---CCUCAu -3' miRNA: 3'- -CCu----UGGUGG-GGC-GUACCGacuGGAGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 10871 | 0.68 | 0.349464 |
Target: 5'- aGGAGaCGCUgCGCGUaGCUGACUUCGg -3' miRNA: 3'- -CCUUgGUGGgGCGUAcCGACUGGAGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 10432 | 0.66 | 0.462001 |
Target: 5'- -cAGgCGCCCgGCcaAUGGCUGacaGCCUCGa -3' miRNA: 3'- ccUUgGUGGGgCG--UACCGAC---UGGAGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 8508 | 0.67 | 0.432046 |
Target: 5'- --cGCCACCCUGCuGUGccuGCUGAUCUUc -3' miRNA: 3'- ccuUGGUGGGGCG-UAC---CGACUGGAGu -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 7940 | 1.1 | 0.000277 |
Target: 5'- aGGAACCACCCCGCAUGGCUGACCUCAc -3' miRNA: 3'- -CCUUGGUGGGGCGUACCGACUGGAGU- -5' |
|||||||
11963 | 5' | -57.4 | NC_003278.1 | + | 2320 | 0.66 | 0.441906 |
Target: 5'- cGAGCCGCCgCUGUcuauggaggGGCUGGCCa-- -3' miRNA: 3'- cCUUGGUGG-GGCGua-------CCGACUGGagu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home