miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11964 3' -61.1 NC_003278.1 + 4302 0.66 0.348212
Target:  5'- cGgCGCUACUGAgGGGCGagGGUGgGcgGCa -3'
miRNA:   3'- -CgGCGGUGGCU-CCUGCg-CCACgCa-CG- -5'
11964 3' -61.1 NC_003278.1 + 23261 0.66 0.348212
Target:  5'- cGCUGCCacGCUGuAGGcgguuccacucgGCGCGGgcgGCGcGCa -3'
miRNA:   3'- -CGGCGG--UGGC-UCC------------UGCGCCa--CGCaCG- -5'
11964 3' -61.1 NC_003278.1 + 11903 0.66 0.340075
Target:  5'- aGCagGUCGCCGGucaacacacGGACGCGcUGCGcgGCa -3'
miRNA:   3'- -CGg-CGGUGGCU---------CCUGCGCcACGCa-CG- -5'
11964 3' -61.1 NC_003278.1 + 12103 0.66 0.332077
Target:  5'- cGCCGUCGCgGu--AgGUGGUGCGaUGCa -3'
miRNA:   3'- -CGGCGGUGgCuccUgCGCCACGC-ACG- -5'
11964 3' -61.1 NC_003278.1 + 31208 0.67 0.301476
Target:  5'- cGCCGCCagGCUGcuccGGGCuGCGaGUGC-UGCa -3'
miRNA:   3'- -CGGCGG--UGGCu---CCUG-CGC-CACGcACG- -5'
11964 3' -61.1 NC_003278.1 + 7454 0.67 0.301476
Target:  5'- uGUCGUUGCCGcuGGugGUGGUGuCGUaccaGCg -3'
miRNA:   3'- -CGGCGGUGGCu-CCugCGCCAC-GCA----CG- -5'
11964 3' -61.1 NC_003278.1 + 18339 0.67 0.301476
Target:  5'- uGCCGCCcCCGcGGAaggccuccaucuUGCGGgccaGCGgggGCa -3'
miRNA:   3'- -CGGCGGuGGCuCCU------------GCGCCa---CGCa--CG- -5'
11964 3' -61.1 NC_003278.1 + 34648 0.67 0.28701
Target:  5'- uGCCGCUGCUGAGcaucuggcuGGCGaaGGUGUGgcgGCa -3'
miRNA:   3'- -CGGCGGUGGCUC---------CUGCg-CCACGCa--CG- -5'
11964 3' -61.1 NC_003278.1 + 22360 0.67 0.269029
Target:  5'- uGCCGgCgguACCGAGGACcgagccgagcagauCGGUGCG-GCc -3'
miRNA:   3'- -CGGCgG---UGGCUCCUGc-------------GCCACGCaCG- -5'
11964 3' -61.1 NC_003278.1 + 33215 0.67 0.266344
Target:  5'- gGCUGCgGCCGAGGccauCGCcg-GCGUGa -3'
miRNA:   3'- -CGGCGgUGGCUCCu---GCGccaCGCACg -5'
11964 3' -61.1 NC_003278.1 + 29369 0.68 0.259728
Target:  5'- uGCCuGCUACguucugggCGAcGugGCGGUGCGcgGCg -3'
miRNA:   3'- -CGG-CGGUG--------GCUcCugCGCCACGCa-CG- -5'
11964 3' -61.1 NC_003278.1 + 9058 0.68 0.246899
Target:  5'- aGCCGCCcgGgCGAGGguucaccaGCGCGGggaacUGUGCg -3'
miRNA:   3'- -CGGCGG--UgGCUCC--------UGCGCCac---GCACG- -5'
11964 3' -61.1 NC_003278.1 + 13175 0.68 0.240684
Target:  5'- -aCGCgACCGucGGcGGCGCGG-GCGUGg -3'
miRNA:   3'- cgGCGgUGGC--UC-CUGCGCCaCGCACg -5'
11964 3' -61.1 NC_003278.1 + 12703 0.68 0.240684
Target:  5'- uGCCGCCACCac--ACGCGGUG-GaGCa -3'
miRNA:   3'- -CGGCGGUGGcuccUGCGCCACgCaCG- -5'
11964 3' -61.1 NC_003278.1 + 2153 0.68 0.2346
Target:  5'- cGUCGCCcgGCUGAGcAgGCGGUGCGg-- -3'
miRNA:   3'- -CGGCGG--UGGCUCcUgCGCCACGCacg -5'
11964 3' -61.1 NC_003278.1 + 31859 0.68 0.228645
Target:  5'- cGCCgcGCCGCCGGcGGGCGCcgaccGGaUGcCGUGUu -3'
miRNA:   3'- -CGG--CGGUGGCU-CCUGCG-----CC-AC-GCACG- -5'
11964 3' -61.1 NC_003278.1 + 27292 0.68 0.228645
Target:  5'- uGCgGCCG-CGAGGuCGCG--GCGUGCc -3'
miRNA:   3'- -CGgCGGUgGCUCCuGCGCcaCGCACG- -5'
11964 3' -61.1 NC_003278.1 + 13122 0.69 0.222819
Target:  5'- -gCGCCGCCGAcGGuCGCGucgGCGaUGCc -3'
miRNA:   3'- cgGCGGUGGCU-CCuGCGCca-CGC-ACG- -5'
11964 3' -61.1 NC_003278.1 + 17387 0.69 0.222819
Target:  5'- gGCCcgGCaCGCCGAGGauGCGCGGUaccacgcccaaGCGgGCc -3'
miRNA:   3'- -CGG--CG-GUGGCUCC--UGCGCCA-----------CGCaCG- -5'
11964 3' -61.1 NC_003278.1 + 5213 0.69 0.195557
Target:  5'- uGCCGCCACCGGuGAC-CGGggGCcgcUGCu -3'
miRNA:   3'- -CGGCGGUGGCUcCUGcGCCa-CGc--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.