miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11964 5' -57.4 NC_003278.1 + 4201 0.66 0.465776
Target:  5'- cUGgAUGGGCUGGcgugucugcgacaUCGCCGAccaccugGGCGa -3'
miRNA:   3'- aGCgUACCUGACC-------------AGCGGCUa------CCGUa -5'
11964 5' -57.4 NC_003278.1 + 32357 0.66 0.465776
Target:  5'- uUCGCcUGGcACUGGUgcgaGCCGGcagcgacUGGCGc -3'
miRNA:   3'- -AGCGuACC-UGACCAg---CGGCU-------ACCGUa -5'
11964 5' -57.4 NC_003278.1 + 17184 0.66 0.4464
Target:  5'- -aGCGUaccGCUGGUgcccgccuUGCCGAUGGCAg -3'
miRNA:   3'- agCGUAcc-UGACCA--------GCGGCUACCGUa -5'
11964 5' -57.4 NC_003278.1 + 14811 0.66 0.436384
Target:  5'- -aGCGUGGuCgGGUUGCUGccGGCGg -3'
miRNA:   3'- agCGUACCuGaCCAGCGGCuaCCGUa -5'
11964 5' -57.4 NC_003278.1 + 6021 0.68 0.31903
Target:  5'- gCGCAUGGGC-GGccugcCGCCGGUGGa-- -3'
miRNA:   3'- aGCGUACCUGaCCa----GCGGCUACCgua -5'
11964 5' -57.4 NC_003278.1 + 12081 0.69 0.295546
Target:  5'- aUGCA-GGGCgucgcGGUCGCCGuugGGCGg -3'
miRNA:   3'- aGCGUaCCUGa----CCAGCGGCua-CCGUa -5'
11964 5' -57.4 NC_003278.1 + 29714 0.69 0.288023
Target:  5'- -aGCGUGGAUUugccggcaccGGccUCGCCGGUGGCc- -3'
miRNA:   3'- agCGUACCUGA----------CC--AGCGGCUACCGua -5'
11964 5' -57.4 NC_003278.1 + 21734 0.69 0.280651
Target:  5'- gCGCcgGGgcGCUGG-CGCCGAgcaccagGGCAc -3'
miRNA:   3'- aGCGuaCC--UGACCaGCGGCUa------CCGUa -5'
11964 5' -57.4 NC_003278.1 + 16811 0.69 0.279922
Target:  5'- cCGCAccGGACUGGcucgaagcccucuUCGCaGAUGGCGUc -3'
miRNA:   3'- aGCGUa-CCUGACC-------------AGCGgCUACCGUA- -5'
11964 5' -57.4 NC_003278.1 + 14635 0.7 0.25266
Target:  5'- -gGCAacGGcCUGGUCGgCGGUGGCGa -3'
miRNA:   3'- agCGUa-CCuGACCAGCgGCUACCGUa -5'
11964 5' -57.4 NC_003278.1 + 14339 0.7 0.246031
Target:  5'- gCGCAaacGuGCUGGUCGCCGAgcUGGUAc -3'
miRNA:   3'- aGCGUa--CcUGACCAGCGGCU--ACCGUa -5'
11964 5' -57.4 NC_003278.1 + 21669 0.72 0.1773
Target:  5'- -aGCAUGGccagcagcgGCUGGUcgaaCGUCGGUGGCGUg -3'
miRNA:   3'- agCGUACC---------UGACCA----GCGGCUACCGUA- -5'
11964 5' -57.4 NC_003278.1 + 15337 0.74 0.122592
Target:  5'- aCGCcaagGGGCUGGUUaCCGGUGGCGg -3'
miRNA:   3'- aGCGua--CCUGACCAGcGGCUACCGUa -5'
11964 5' -57.4 NC_003278.1 + 8714 1.05 0.000545
Target:  5'- uUCGCAUGGACUGGUCGCCGAUGGCAUc -3'
miRNA:   3'- -AGCGUACCUGACCAGCGGCUACCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.