miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11967 3' -57.5 NC_003278.1 + 28489 0.66 0.438116
Target:  5'- --gGGCACCAccagacGC-CGCGCGGGCUg- -3'
miRNA:   3'- augCUGUGGUu-----CGaGCGCGCUCGGau -5'
11967 3' -57.5 NC_003278.1 + 19725 0.66 0.438116
Target:  5'- cGCGGCAUCcaGAGCgcugcCGCGCuGGCCg- -3'
miRNA:   3'- aUGCUGUGG--UUCGa----GCGCGcUCGGau -5'
11967 3' -57.5 NC_003278.1 + 2772 0.66 0.408591
Target:  5'- gGCG-CACC-AGCU-GCGCGAcGCCa- -3'
miRNA:   3'- aUGCuGUGGuUCGAgCGCGCU-CGGau -5'
11967 3' -57.5 NC_003278.1 + 3652 0.66 0.399029
Target:  5'- gGCGuAUACCAGGCcuucgCGCGCGAuGCg-- -3'
miRNA:   3'- aUGC-UGUGGUUCGa----GCGCGCU-CGgau -5'
11967 3' -57.5 NC_003278.1 + 32608 0.67 0.380341
Target:  5'- gGCGuuuGCC-GGCgCGCGCGGGCCg- -3'
miRNA:   3'- aUGCug-UGGuUCGaGCGCGCUCGGau -5'
11967 3' -57.5 NC_003278.1 + 14108 0.67 0.362246
Target:  5'- -uCGuCGCCAGGC-CGUGgCGGGCCa- -3'
miRNA:   3'- auGCuGUGGUUCGaGCGC-GCUCGGau -5'
11967 3' -57.5 NC_003278.1 + 30896 0.67 0.362246
Target:  5'- -uCGACcucACCGAGCU-GCGCG-GCCUc -3'
miRNA:   3'- auGCUG---UGGUUCGAgCGCGCuCGGAu -5'
11967 3' -57.5 NC_003278.1 + 33171 0.67 0.344759
Target:  5'- aGCGACAgCGA-CUgGCGCGAGCg-- -3'
miRNA:   3'- aUGCUGUgGUUcGAgCGCGCUCGgau -5'
11967 3' -57.5 NC_003278.1 + 30314 0.69 0.273702
Target:  5'- aGCGGCACCAccaGGCgcagCGCGUcgaccaGGGCCa- -3'
miRNA:   3'- aUGCUGUGGU---UCGa---GCGCG------CUCGGau -5'
11967 3' -57.5 NC_003278.1 + 6819 0.7 0.226933
Target:  5'- gGCGGCGagguaGAGCuUCGCGCGGGCUUc -3'
miRNA:   3'- aUGCUGUgg---UUCG-AGCGCGCUCGGAu -5'
11967 3' -57.5 NC_003278.1 + 3577 0.7 0.226933
Target:  5'- -uCGACACCuaccGCaUCGCGCGcgaaGGCCUGg -3'
miRNA:   3'- auGCUGUGGuu--CG-AGCGCGC----UCGGAU- -5'
11967 3' -57.5 NC_003278.1 + 9359 0.7 0.220834
Target:  5'- aACuGCGCCgAGGCcagCGCGUGAGCCUu -3'
miRNA:   3'- aUGcUGUGG-UUCGa--GCGCGCUCGGAu -5'
11967 3' -57.5 NC_003278.1 + 9393 0.73 0.133063
Target:  5'- gGCGuguUGCUcguAGGCUCGCGCGAGCUUGg -3'
miRNA:   3'- aUGCu--GUGG---UUCGAGCGCGCUCGGAU- -5'
11967 3' -57.5 NC_003278.1 + 26565 0.74 0.125586
Target:  5'- cGCGGCGCCAGGUggucaGCGCGAucaucggcGCCUAc -3'
miRNA:   3'- aUGCUGUGGUUCGag---CGCGCU--------CGGAU- -5'
11967 3' -57.5 NC_003278.1 + 20752 0.74 0.121995
Target:  5'- -uCGGCGgCGAGCUCGCGC-AGCCa- -3'
miRNA:   3'- auGCUGUgGUUCGAGCGCGcUCGGau -5'
11967 3' -57.5 NC_003278.1 + 29116 0.74 0.115098
Target:  5'- cACGACGCCGccGGCUUGCuGCaGGGCCUu -3'
miRNA:   3'- aUGCUGUGGU--UCGAGCG-CG-CUCGGAu -5'
11967 3' -57.5 NC_003278.1 + 9319 1.04 0.000572
Target:  5'- cUACGACACCAAGCUCGCGCGAGCCUAc -3'
miRNA:   3'- -AUGCUGUGGUUCGAGCGCGCUCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.