miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11967 5' -62.1 NC_003278.1 + 14908 0.66 0.28045
Target:  5'- aGCCGGCUugcaGCGCCcaucacGCuCAGCGCGa -3'
miRNA:   3'- gCGGUUGA----CGCGGcuc---CG-GUCGCGCa -5'
11967 5' -62.1 NC_003278.1 + 4766 0.66 0.28045
Target:  5'- cCGCCAGCcuggGUaCCGAGGCgcucuccuuCAGCGCc- -3'
miRNA:   3'- -GCGGUUGa---CGcGGCUCCG---------GUCGCGca -5'
11967 5' -62.1 NC_003278.1 + 3645 0.66 0.279747
Target:  5'- gGCCGACaggaauaucugguUGCGCCccguuuCCAGCGCGUc -3'
miRNA:   3'- gCGGUUG-------------ACGCGGcucc--GGUCGCGCA- -5'
11967 5' -62.1 NC_003278.1 + 18642 0.66 0.273483
Target:  5'- gGUCAACgGCaaggaccuGCuCGAGGCaCAGCGCa- -3'
miRNA:   3'- gCGGUUGaCG--------CG-GCUCCG-GUCGCGca -5'
11967 5' -62.1 NC_003278.1 + 14949 0.66 0.273483
Target:  5'- aGCCGgcuggcagugGCUGCGUugcccguaauCGAGGCCGGUaguagcccggccGCGUu -3'
miRNA:   3'- gCGGU----------UGACGCG----------GCUCCGGUCG------------CGCA- -5'
11967 5' -62.1 NC_003278.1 + 19336 0.66 0.273483
Target:  5'- uGCCuugaGCGCCcGGGCCGuCGCGUc -3'
miRNA:   3'- gCGGuugaCGCGGcUCCGGUcGCGCA- -5'
11967 5' -62.1 NC_003278.1 + 20782 0.66 0.273483
Target:  5'- uCGCCGAUguUGUGCagcaggugacUGAGGUCGGCgGCGa -3'
miRNA:   3'- -GCGGUUG--ACGCG----------GCUCCGGUCG-CGCa -5'
11967 5' -62.1 NC_003278.1 + 8355 0.66 0.272794
Target:  5'- uGCCGcGCUGCGCCu-GGucugcuaCCAGCGCu- -3'
miRNA:   3'- gCGGU-UGACGCGGcuCC-------GGUCGCGca -5'
11967 5' -62.1 NC_003278.1 + 32875 0.66 0.266654
Target:  5'- gGCCAG-UGCGUCGAaGaCCcGCGCGUg -3'
miRNA:   3'- gCGGUUgACGCGGCUcC-GGuCGCGCA- -5'
11967 5' -62.1 NC_003278.1 + 21406 0.66 0.266654
Target:  5'- cCGCCGAC-GCGCUGGa--CGGCGCGc -3'
miRNA:   3'- -GCGGUUGaCGCGGCUccgGUCGCGCa -5'
11967 5' -62.1 NC_003278.1 + 23185 0.66 0.265979
Target:  5'- gCGCCGcCcGCGCCGAGuggaaccGCCuacAGCGUGg -3'
miRNA:   3'- -GCGGUuGaCGCGGCUC-------CGG---UCGCGCa -5'
11967 5' -62.1 NC_003278.1 + 7984 0.66 0.253413
Target:  5'- gCGCCAucaUGgGCCucGGCCuGgGCGUa -3'
miRNA:   3'- -GCGGUug-ACgCGGcuCCGGuCgCGCA- -5'
11967 5' -62.1 NC_003278.1 + 13687 0.66 0.253413
Target:  5'- cCGCuCAAuCUGCGCCaGGGCUucggcggccaGGCGCu- -3'
miRNA:   3'- -GCG-GUU-GACGCGGcUCCGG----------UCGCGca -5'
11967 5' -62.1 NC_003278.1 + 19634 0.66 0.253413
Target:  5'- gGCCAAUgGCGCCaucaacagccAGGCgCAGCGCu- -3'
miRNA:   3'- gCGGUUGaCGCGGc---------UCCG-GUCGCGca -5'
11967 5' -62.1 NC_003278.1 + 13968 0.66 0.25083
Target:  5'- aCGUCGACggugauuucgaagGUGCCGGGgacGCCGGCGgGg -3'
miRNA:   3'- -GCGGUUGa------------CGCGGCUC---CGGUCGCgCa -5'
11967 5' -62.1 NC_003278.1 + 22811 0.66 0.246997
Target:  5'- aGCCGguGCUcGCGCCGGcGCUGGCGgGc -3'
miRNA:   3'- gCGGU--UGA-CGCGGCUcCGGUCGCgCa -5'
11967 5' -62.1 NC_003278.1 + 5025 0.66 0.246997
Target:  5'- uCGCCGAcCUG-GCCGAacucGGCUugGGUGCGg -3'
miRNA:   3'- -GCGGUU-GACgCGGCU----CCGG--UCGCGCa -5'
11967 5' -62.1 NC_003278.1 + 23042 0.66 0.240717
Target:  5'- gGCCGACcGCGacagcuaCGAcGGCguGCGCGc -3'
miRNA:   3'- gCGGUUGaCGCg------GCU-CCGguCGCGCa -5'
11967 5' -62.1 NC_003278.1 + 30301 0.66 0.240717
Target:  5'- gGCgCAGC-GCGUCGAccagGGCCAucaucuGCGCGUg -3'
miRNA:   3'- gCG-GUUGaCGCGGCU----CCGGU------CGCGCA- -5'
11967 5' -62.1 NC_003278.1 + 10622 0.67 0.228556
Target:  5'- gCGCgAACUGCGCgGcaagcaGGGCCguauucGGCGCa- -3'
miRNA:   3'- -GCGgUUGACGCGgC------UCCGG------UCGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.