Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 9674 | 1.1 | 0.000226 |
Target: 5'- aACCCUAUCGCCAGUGGGCUGACCAGCc -3' miRNA: 3'- -UGGGAUAGCGGUCACCCGACUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 17612 | 0.7 | 0.228924 |
Target: 5'- gACCCUgucgaacGUCGCCGucaacGGCgUGACCGGCa -3' miRNA: 3'- -UGGGA-------UAGCGGUcac--CCG-ACUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 22356 | 0.69 | 0.26197 |
Target: 5'- cGCCC--UCGCCcgcGUgacGGGCuaccUGACCAGCg -3' miRNA: 3'- -UGGGauAGCGGu--CA---CCCG----ACUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 33251 | 0.69 | 0.268888 |
Target: 5'- cACCCUGUUGUUGGcUGaGGCUGGCgAGa -3' miRNA: 3'- -UGGGAUAGCGGUC-AC-CCGACUGgUCg -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 30872 | 0.69 | 0.283165 |
Target: 5'- gGCCgCUGUCGCgc-UGGGC-GAUCGGCa -3' miRNA: 3'- -UGG-GAUAGCGgucACCCGaCUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 23238 | 0.68 | 0.298035 |
Target: 5'- uACgCgcUCGCCAG-GGGCcGGCCGGa -3' miRNA: 3'- -UGgGauAGCGGUCaCCCGaCUGGUCg -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 29872 | 0.68 | 0.305694 |
Target: 5'- aGCCgCUguucaacgGUCGCgCGuUGGGCgUGACCGGCc -3' miRNA: 3'- -UGG-GA--------UAGCG-GUcACCCG-ACUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 21319 | 0.68 | 0.313503 |
Target: 5'- gGCCUgcUCGCCGGcuuaGGGCaGAUCAaGCg -3' miRNA: 3'- -UGGGauAGCGGUCa---CCCGaCUGGU-CG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 21043 | 0.68 | 0.313503 |
Target: 5'- gUCCUGgcaauugcCGCCGucGUGGcgguGCUGGCCGGCg -3' miRNA: 3'- uGGGAUa-------GCGGU--CACC----CGACUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 22676 | 0.68 | 0.321462 |
Target: 5'- uGCCCuUGUCGaCCAGUccGCUGucacuCCAGCc -3' miRNA: 3'- -UGGG-AUAGC-GGUCAccCGACu----GGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 4687 | 0.68 | 0.329572 |
Target: 5'- cGCCUgGUUGggcuCCAGuUGGGCgaagagGGCCAGCu -3' miRNA: 3'- -UGGGaUAGC----GGUC-ACCCGa-----CUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 23001 | 0.67 | 0.337831 |
Target: 5'- aACCUcaccCGCCAGgauGGC-GACCAGCa -3' miRNA: 3'- -UGGGaua-GCGGUCac-CCGaCUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 6006 | 0.67 | 0.34624 |
Target: 5'- cAUCCUGUCGCagaAGcgcaUGGGC-GGCCuGCc -3' miRNA: 3'- -UGGGAUAGCGg--UC----ACCCGaCUGGuCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 20515 | 0.67 | 0.354798 |
Target: 5'- cACCCUGaugcgCGCCGucgaGGGC-GGCCAGUu -3' miRNA: 3'- -UGGGAUa----GCGGUca--CCCGaCUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 8156 | 0.67 | 0.354798 |
Target: 5'- cGCCC--UCGCCcGUGugcccuGGCUGACCAa- -3' miRNA: 3'- -UGGGauAGCGGuCAC------CCGACUGGUcg -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 29754 | 0.67 | 0.381355 |
Target: 5'- gGCCUg--CGCCGcu-GGCUGACCcAGCu -3' miRNA: 3'- -UGGGauaGCGGUcacCCGACUGG-UCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 33677 | 0.67 | 0.381355 |
Target: 5'- cGCCCgagaAUauaGCCAaUGccgaacGGCUGGCCGGCa -3' miRNA: 3'- -UGGGa---UAg--CGGUcAC------CCGACUGGUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 27837 | 0.67 | 0.381355 |
Target: 5'- uACCgCUAUaCGCCGcagGGGCUG-CgCGGCa -3' miRNA: 3'- -UGG-GAUA-GCGGUca-CCCGACuG-GUCG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 8045 | 0.66 | 0.390498 |
Target: 5'- uGCCCUGcucggCGCCu---GGCUGGCCAccgGCa -3' miRNA: 3'- -UGGGAUa----GCGGucacCCGACUGGU---CG- -5' |
|||||||
11968 | 3' | -58.1 | NC_003278.1 | + | 2315 | 0.66 | 0.390498 |
Target: 5'- cGCCgCUGUCuaUGGagGGGCUGGCCaAGUc -3' miRNA: 3'- -UGG-GAUAGcgGUCa-CCCGACUGG-UCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home