miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11968 5' -56.7 NC_003278.1 + 9766 0.66 0.476574
Target:  5'- cUGUUGCa-GCCGGCgaGCAACAucagGCa- -3'
miRNA:   3'- uACAACGagCGGCCGa-CGUUGU----CGcg -5'
11968 5' -56.7 NC_003278.1 + 27905 0.66 0.476574
Target:  5'- ----cGCUUGCCGcGCaGCcccuGCGGCGUa -3'
miRNA:   3'- uacaaCGAGCGGC-CGaCGu---UGUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 8360 0.66 0.476574
Target:  5'- ----cGCUgCGCCuGGuCUGCuacCAGCGCu -3'
miRNA:   3'- uacaaCGA-GCGG-CC-GACGuu-GUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 6622 0.66 0.476574
Target:  5'- ----cGCguacCGCCGGCUGCGuCAuCGCc -3'
miRNA:   3'- uacaaCGa---GCGGCCGACGUuGUcGCG- -5'
11968 5' -56.7 NC_003278.1 + 19958 0.66 0.466072
Target:  5'- ---gUGCggGCCuGUUGCcGCAGCGCc -3'
miRNA:   3'- uacaACGagCGGcCGACGuUGUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 14140 0.66 0.455691
Target:  5'- ---cUGCUCaccgacaUCGGC-GCGGCAGCGCu -3'
miRNA:   3'- uacaACGAGc------GGCCGaCGUUGUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 6539 0.66 0.455691
Target:  5'- -gGgcGCccUUGCCGGcCUGCAGCA-CGCc -3'
miRNA:   3'- uaCaaCG--AGCGGCC-GACGUUGUcGCG- -5'
11968 5' -56.7 NC_003278.1 + 14989 0.66 0.455691
Target:  5'- -cGUUGCaUCGCCGcucgcGCUGagcgugAugGGCGCu -3'
miRNA:   3'- uaCAACG-AGCGGC-----CGACg-----UugUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 4529 0.67 0.425321
Target:  5'- aGUGggcCUgGCCGGCUGguGaguuCGGCGCc -3'
miRNA:   3'- -UACaacGAgCGGCCGACguU----GUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 14801 0.67 0.425321
Target:  5'- -gGUUGCU-GCCGGCgGUGACgaugccauuGGCGUu -3'
miRNA:   3'- uaCAACGAgCGGCCGaCGUUG---------UCGCG- -5'
11968 5' -56.7 NC_003278.1 + 31891 0.67 0.415468
Target:  5'- cGUGUUcaucaGCUCGCC--CUGCAAaGGCGCc -3'
miRNA:   3'- -UACAA-----CGAGCGGccGACGUUgUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 9391 0.67 0.405757
Target:  5'- cGUGUUGCUCGuaGGCUcGCGcgaGCuuGGUGUc -3'
miRNA:   3'- -UACAACGAGCggCCGA-CGU---UG--UCGCG- -5'
11968 5' -56.7 NC_003278.1 + 10530 0.67 0.39619
Target:  5'- -cGUUcGCUCGCCcGCgaucuACGGCGCa -3'
miRNA:   3'- uaCAA-CGAGCGGcCGacgu-UGUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 31218 0.67 0.39619
Target:  5'- ---cUGCUC-CgGGCUGCGAguGCuGCa -3'
miRNA:   3'- uacaACGAGcGgCCGACGUUguCG-CG- -5'
11968 5' -56.7 NC_003278.1 + 19627 0.67 0.386769
Target:  5'- -gGUUGCgggugcugaGCCGGCguUGCugaGGCGCg -3'
miRNA:   3'- uaCAACGag-------CGGCCG--ACGuugUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 31915 0.67 0.386769
Target:  5'- -cGgcGCcCGCCGGCgGC-GCGGCGg -3'
miRNA:   3'- uaCaaCGaGCGGCCGaCGuUGUCGCg -5'
11968 5' -56.7 NC_003278.1 + 5280 0.67 0.386769
Target:  5'- ----aGCUCGCCaaGCU-CAACGGCGUg -3'
miRNA:   3'- uacaaCGAGCGGc-CGAcGUUGUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 7451 0.67 0.378418
Target:  5'- -cGUUGC-CGCUGGUgguggugucguaccaGCggUAGCGCu -3'
miRNA:   3'- uaCAACGaGCGGCCGa--------------CGuuGUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 9432 0.68 0.359407
Target:  5'- --cUUGCUCcuGUgGGUacaGCAGCAGCGCa -3'
miRNA:   3'- uacAACGAG--CGgCCGa--CGUUGUCGCG- -5'
11968 5' -56.7 NC_003278.1 + 19711 0.68 0.359407
Target:  5'- -gGUUGCguaagcgcugCGCCuGGCUGuUGAUGGCGCc -3'
miRNA:   3'- uaCAACGa---------GCGG-CCGAC-GUUGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.