Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11969 | 3' | -60.4 | NC_003278.1 | + | 32532 | 0.71 | 0.145531 |
Target: 5'- uGCUGUCguuCCaaCCGUGcACGCCCaUGUAGCc -3' miRNA: 3'- -CGACAG---GGc-GGCAC-UGCGGG-ACGUCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 14288 | 0.69 | 0.218007 |
Target: 5'- aGCcGUCUCGCCG-GGCGCgCC-GcCGGCg -3' miRNA: 3'- -CGaCAGGGCGGCaCUGCG-GGaC-GUCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 15518 | 0.68 | 0.26136 |
Target: 5'- cGCUGguaugCaCUGCCGUGGCcaguCCCUGCgacaccaacGGCa -3' miRNA: 3'- -CGACa----G-GGCGGCACUGc---GGGACG---------UCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 5785 | 0.67 | 0.281991 |
Target: 5'- uGCUGgaaCCaGCCaaUGuucACGUCCUGCAGCa -3' miRNA: 3'- -CGACag-GG-CGGc-AC---UGCGGGACGUCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 21318 | 0.67 | 0.289149 |
Target: 5'- cGCUGaagCgCGCCGgcaggucGAUGCCCagGUAGCc -3' miRNA: 3'- -CGACa--GgGCGGCa------CUGCGGGa-CGUCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 20655 | 0.67 | 0.303892 |
Target: 5'- gGUUGUCCaacuggGUCGcGGCGaCCCUcGCGGCc -3' miRNA: 3'- -CGACAGGg-----CGGCaCUGC-GGGA-CGUCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 28176 | 0.66 | 0.319206 |
Target: 5'- aGgUGUCgCCGCaCuUGccGCGCCC-GCAGCg -3' miRNA: 3'- -CgACAG-GGCG-GcAC--UGCGGGaCGUCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 31938 | 0.66 | 0.343249 |
Target: 5'- aGCUGaugaacacggcaUCCgGUCG--GCGCCCgccgGCGGCg -3' miRNA: 3'- -CGAC------------AGGgCGGCacUGCGGGa---CGUCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 1552 | 0.66 | 0.343249 |
Target: 5'- aGCUuggaacUCgCGCCaaugcaGACGCgCCUGCAGCa -3' miRNA: 3'- -CGAc-----AGgGCGGca----CUGCG-GGACGUCG- -5' |
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11969 | 3' | -60.4 | NC_003278.1 | + | 5485 | 0.72 | 0.141576 |
Target: 5'- cGCUGacgCCgaUGCCGaucuucuCGCCCUGCAGCu -3' miRNA: 3'- -CGACa--GG--GCGGCacu----GCGGGACGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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