miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11969 3' -60.4 NC_003278.1 + 1552 0.66 0.343249
Target:  5'- aGCUuggaacUCgCGCCaaugcaGACGCgCCUGCAGCa -3'
miRNA:   3'- -CGAc-----AGgGCGGca----CUGCG-GGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 3326 0.7 0.185882
Target:  5'- --cGUaa-GUCaUGACGCCCUGCAGCa -3'
miRNA:   3'- cgaCAgggCGGcACUGCGGGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 3934 0.71 0.158006
Target:  5'- cGCUGgaUCCgCGCC-UGGCGCUCaagcugccgaUGCAGCa -3'
miRNA:   3'- -CGAC--AGG-GCGGcACUGCGGG----------ACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 5485 0.72 0.141576
Target:  5'- cGCUGacgCCgaUGCCGaucuucuCGCCCUGCAGCu -3'
miRNA:   3'- -CGACa--GG--GCGGCacu----GCGGGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 5785 0.67 0.281991
Target:  5'- uGCUGgaaCCaGCCaaUGuucACGUCCUGCAGCa -3'
miRNA:   3'- -CGACag-GG-CGGc-AC---UGCGGGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 5889 0.66 0.327077
Target:  5'- cCUGgcaCCGCCGUGACccggGCCUgGUGGUg -3'
miRNA:   3'- cGACag-GGCGGCACUG----CGGGaCGUCG- -5'
11969 3' -60.4 NC_003278.1 + 6267 0.69 0.218007
Target:  5'- --aGUCCCGCCaaGGCGCacuuCCUGC-GCg -3'
miRNA:   3'- cgaCAGGGCGGcaCUGCG----GGACGuCG- -5'
11969 3' -60.4 NC_003278.1 + 8741 0.68 0.268097
Target:  5'- cGCUGgCCCGaagaCCcUGGcCGCCCUcgGCGGCg -3'
miRNA:   3'- -CGACaGGGC----GGcACU-GCGGGA--CGUCG- -5'
11969 3' -60.4 NC_003278.1 + 9770 1.11 0.000116
Target:  5'- gGCUGUCCCGCCGUGACGCCCUGCAGCc -3'
miRNA:   3'- -CGACAGGGCGGCACUGCGGGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 10493 0.71 0.145531
Target:  5'- gGCUGUCagCCauugGCCG-GGCGCCugauCUGCGGCg -3'
miRNA:   3'- -CGACAG--GG----CGGCaCUGCGG----GACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 11941 0.7 0.185882
Target:  5'- cGCcGgCCCGCgGcGAUGCCCaagGCAGCc -3'
miRNA:   3'- -CGaCaGGGCGgCaCUGCGGGa--CGUCG- -5'
11969 3' -60.4 NC_003278.1 + 12010 0.74 0.093019
Target:  5'- cCUGaUCCCGCCcaacggcgaccGcGACGCCCUGCAucGCa -3'
miRNA:   3'- cGAC-AGGGCGG-----------CaCUGCGGGACGU--CG- -5'
11969 3' -60.4 NC_003278.1 + 14288 0.69 0.218007
Target:  5'- aGCcGUCUCGCCG-GGCGCgCC-GcCGGCg -3'
miRNA:   3'- -CGaCAGGGCGGCaCUGCG-GGaC-GUCG- -5'
11969 3' -60.4 NC_003278.1 + 15073 0.69 0.201389
Target:  5'- cGCguagGUCCCgGCgGUGACGCCggaguugGcCAGCg -3'
miRNA:   3'- -CGa---CAGGG-CGgCACUGCGGga-----C-GUCG- -5'
11969 3' -60.4 NC_003278.1 + 15346 0.66 0.319206
Target:  5'- gGCUGguuaCCGgUGgcgGugGCCUgacgGCAGCa -3'
miRNA:   3'- -CGACag--GGCgGCa--CugCGGGa---CGUCG- -5'
11969 3' -60.4 NC_003278.1 + 15518 0.68 0.26136
Target:  5'- cGCUGguaugCaCUGCCGUGGCcaguCCCUGCgacaccaacGGCa -3'
miRNA:   3'- -CGACa----G-GGCGGCACUGc---GGGACG---------UCG- -5'
11969 3' -60.4 NC_003278.1 + 19178 0.79 0.035863
Target:  5'- cGgaGUUCCGCCGaUGGCGaaugaCCUGCAGCu -3'
miRNA:   3'- -CgaCAGGGCGGC-ACUGCg----GGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 19347 0.66 0.327077
Target:  5'- cGCgccUUCCGCacccagCGcGGCGCCCUGgAGCa -3'
miRNA:   3'- -CGac-AGGGCG------GCaCUGCGGGACgUCG- -5'
11969 3' -60.4 NC_003278.1 + 19522 0.66 0.343249
Target:  5'- ----aCCUGCagcacaGccACGCCCUGCAGCa -3'
miRNA:   3'- cgacaGGGCGg-----CacUGCGGGACGUCG- -5'
11969 3' -60.4 NC_003278.1 + 20655 0.67 0.303892
Target:  5'- gGUUGUCCaacuggGUCGcGGCGaCCCUcGCGGCc -3'
miRNA:   3'- -CGACAGGg-----CGGCaCUGC-GGGA-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.