miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11969 5' -53.7 NC_003278.1 + 6498 0.66 0.69911
Target:  5'- gGCGCCc-AGGACGA-GGUGGUCa--- -3'
miRNA:   3'- -CGUGGcuUCCUGUUgCCGCCAGaugu -5'
11969 5' -53.7 NC_003278.1 + 6013 0.66 0.69911
Target:  5'- uCGCaGAAGcGCAugGGCGGcCUGCc -3'
miRNA:   3'- cGUGgCUUCcUGUugCCGCCaGAUGu -5'
11969 5' -53.7 NC_003278.1 + 22061 0.66 0.687854
Target:  5'- cGCGCCGGcuGGGCAcCGauGCGG-CUGCu -3'
miRNA:   3'- -CGUGGCUu-CCUGUuGC--CGCCaGAUGu -5'
11969 5' -53.7 NC_003278.1 + 17836 0.67 0.642376
Target:  5'- uCGCCGAAGcGCacauGugGGCGGUUgACAa -3'
miRNA:   3'- cGUGGCUUCcUG----UugCCGCCAGaUGU- -5'
11969 5' -53.7 NC_003278.1 + 14625 0.67 0.642376
Target:  5'- gGUGCUGGccGGCAACGGCcuGGUCgGCGg -3'
miRNA:   3'- -CGUGGCUucCUGUUGCCG--CCAGaUGU- -5'
11969 5' -53.7 NC_003278.1 + 12781 0.67 0.642376
Target:  5'- -gGCCGGAGGAuCAGCaGGCGGa----- -3'
miRNA:   3'- cgUGGCUUCCU-GUUG-CCGCCagaugu -5'
11969 5' -53.7 NC_003278.1 + 23550 0.67 0.608119
Target:  5'- aGCACC-AAGGGCAGCGcgaaGCGGgCUGu- -3'
miRNA:   3'- -CGUGGcUUCCUGUUGC----CGCCaGAUgu -5'
11969 5' -53.7 NC_003278.1 + 19503 0.68 0.585374
Target:  5'- aGCGCgCGGguGGGGuugcCGGCGGCGGccaUCUGCu -3'
miRNA:   3'- -CGUG-GCU--UCCU----GUUGCCGCC---AGAUGu -5'
11969 5' -53.7 NC_003278.1 + 12558 0.68 0.540462
Target:  5'- aGCGCauGAGGGCcAUGGCGGUggcggcauagacCUGCAg -3'
miRNA:   3'- -CGUGgcUUCCUGuUGCCGCCA------------GAUGU- -5'
11969 5' -53.7 NC_003278.1 + 4205 0.69 0.518432
Target:  5'- uGUACUGGAuGGGC--UGGCGuGUCUGCGa -3'
miRNA:   3'- -CGUGGCUU-CCUGuuGCCGC-CAGAUGU- -5'
11969 5' -53.7 NC_003278.1 + 22609 0.7 0.465067
Target:  5'- -gGCUGGAGuGACAGCGGacuGGUCgACAa -3'
miRNA:   3'- cgUGGCUUC-CUGUUGCCg--CCAGaUGU- -5'
11969 5' -53.7 NC_003278.1 + 505 0.7 0.438466
Target:  5'- cGCGCCGAAGGACuugguuuacuccAacuuugugcagcaggACGGCGGUa-GCAc -3'
miRNA:   3'- -CGUGGCUUCCUG------------U---------------UGCCGCCAgaUGU- -5'
11969 5' -53.7 NC_003278.1 + 4051 0.7 0.434451
Target:  5'- --cCUGAAGGACGGCaagaccGGCGGUgaCUACAa -3'
miRNA:   3'- cguGGCUUCCUGUUG------CCGCCA--GAUGU- -5'
11969 5' -53.7 NC_003278.1 + 27518 0.7 0.424508
Target:  5'- gGCAUCGAcuggggccagGGaGACGACgaGGUGGUCUACc -3'
miRNA:   3'- -CGUGGCU----------UC-CUGUUG--CCGCCAGAUGu -5'
11969 5' -53.7 NC_003278.1 + 4650 0.71 0.414701
Target:  5'- gGCGCUGcuGGaacugaacaaGCAGCGGCagaaGGUCUACAc -3'
miRNA:   3'- -CGUGGCuuCC----------UGUUGCCG----CCAGAUGU- -5'
11969 5' -53.7 NC_003278.1 + 13948 0.71 0.395513
Target:  5'- gGUGCCG-GGGACGccgGCGGgGGUCUGu- -3'
miRNA:   3'- -CGUGGCuUCCUGU---UGCCgCCAGAUgu -5'
11969 5' -53.7 NC_003278.1 + 12034 0.71 0.395513
Target:  5'- -aGCCGGucAGGACcacgccauUGGCGGUCUGCc -3'
miRNA:   3'- cgUGGCU--UCCUGuu------GCCGCCAGAUGu -5'
11969 5' -53.7 NC_003278.1 + 15156 0.72 0.322263
Target:  5'- gGUACCGGcaaugguauuggucAGGcuGCAACGGCGGUCa--- -3'
miRNA:   3'- -CGUGGCU--------------UCC--UGUUGCCGCCAGaugu -5'
11969 5' -53.7 NC_003278.1 + 4299 0.73 0.308568
Target:  5'- cGCuACUGAGGGGCGAgGGUGGgcggcagcaUCUGCGc -3'
miRNA:   3'- -CG-UGGCUUCCUGUUgCCGCC---------AGAUGU- -5'
11969 5' -53.7 NC_003278.1 + 26990 0.76 0.184967
Target:  5'- uGCACCGGAGGGuCAA-GGCGugagcGUCUACAa -3'
miRNA:   3'- -CGUGGCUUCCU-GUUgCCGC-----CAGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.