Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11970 | 3' | -56.2 | NC_003278.1 | + | 14936 | 0.67 | 0.493015 |
|
Target: 5'- uGGCuGCGUUGCCcguaaUCGAGGCCGGu- -3' miRNA: 3'- cCUGcCGUAGUGGa----AGCUCCGGCUgu -5' |
|||||||
| 11970 | 3' | -56.2 | NC_003278.1 | + | 20327 | 0.66 | 0.52495 |
|
Target: 5'- uGGACGccaGCGUUGCCgagCaGGGCCGugGc -3' miRNA: 3'- -CCUGC---CGUAGUGGaa-GcUCCGGCugU- -5' |
|||||||
| 11970 | 3' | -56.2 | NC_003278.1 | + | 7334 | 0.66 | 0.52495 |
|
Target: 5'- cGGACGGC---ACCUgggCGAGuuCGGCAu -3' miRNA: 3'- -CCUGCCGuagUGGAa--GCUCcgGCUGU- -5' |
|||||||
| 11970 | 3' | -56.2 | NC_003278.1 | + | 13238 | 0.66 | 0.557638 |
|
Target: 5'- uGGGCGGCcugcaccGUCACCacgacaacggcaggCGAugGGCUGACGg -3' miRNA: 3'- -CCUGCCG-------UAGUGGaa------------GCU--CCGGCUGU- -5' |
|||||||
| 11970 | 3' | -56.2 | NC_003278.1 | + | 17108 | 0.66 | 0.568668 |
|
Target: 5'- cGG-UGGCGUCGgcgUCUUCGgcgguggcuaccAGGCCGAUg -3' miRNA: 3'- -CCuGCCGUAGU---GGAAGC------------UCCGGCUGu -5' |
|||||||
| 11970 | 3' | -56.2 | NC_003278.1 | + | 21625 | 0.74 | 0.180289 |
|
Target: 5'- aGGGCGGgA--GCCUcgggaaacuccccgUCGAGGCCGGCGa -3' miRNA: 3'- -CCUGCCgUagUGGA--------------AGCUCCGGCUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home