miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11970 5' -54.7 NC_003278.1 + 23097 0.66 0.621745
Target:  5'- uCGUAGCugucgcGGUCGGCCUgcaGGUAgCGg -3'
miRNA:   3'- -GCGUCGuu----CCAGCUGGAg--CCAUaGCa -5'
11970 5' -54.7 NC_003278.1 + 22116 0.67 0.575353
Target:  5'- uGCGGCAgauggcugacaccGGGUCGGCCU-GGcccaugGUCGa -3'
miRNA:   3'- gCGUCGU-------------UCCAGCUGGAgCCa-----UAGCa -5'
11970 5' -54.7 NC_003278.1 + 19034 0.67 0.554099
Target:  5'- gGuCGGCcGGGUCcaugccgguGGCCUCGGgcUCGg -3'
miRNA:   3'- gC-GUCGuUCCAG---------CUGGAGCCauAGCa -5'
11970 5' -54.7 NC_003278.1 + 10277 0.68 0.499442
Target:  5'- uGCAGgacgauacCGAGGUCGACCUUGcugcgGUCGa -3'
miRNA:   3'- gCGUC--------GUUCCAGCUGGAGCca---UAGCa -5'
11970 5' -54.7 NC_003278.1 + 32947 0.68 0.476149
Target:  5'- gCGUAGUuGGGuUCGACCaauccgccggcgCGGUGUCGg -3'
miRNA:   3'- -GCGUCGuUCC-AGCUGGa-----------GCCAUAGCa -5'
11970 5' -54.7 NC_003278.1 + 26854 0.69 0.44731
Target:  5'- gCGCGGUGAGGUCGACCgcaucAUCGc -3'
miRNA:   3'- -GCGUCGUUCCAGCUGGagccaUAGCa -5'
11970 5' -54.7 NC_003278.1 + 16722 0.7 0.417519
Target:  5'- uCGCGGUGAcGUgCGACCagggcgUCGGUGUCGUc -3'
miRNA:   3'- -GCGUCGUUcCA-GCUGG------AGCCAUAGCA- -5'
11970 5' -54.7 NC_003278.1 + 21660 0.72 0.303479
Target:  5'- aGCAGCGgcuGGUCGaACgUCGGUggCGUg -3'
miRNA:   3'- gCGUCGUu--CCAGC-UGgAGCCAuaGCA- -5'
11970 5' -54.7 NC_003278.1 + 4673 0.73 0.252716
Target:  5'- aGCGGCAgaAGGUCuacACCUCGGUcgagAUCGa -3'
miRNA:   3'- gCGUCGU--UCCAGc--UGGAGCCA----UAGCa -5'
11970 5' -54.7 NC_003278.1 + 27032 0.74 0.233191
Target:  5'- cCGguGCAGGGUgaucacugcgcCGACUUCGGcaUGUCGUg -3'
miRNA:   3'- -GCguCGUUCCA-----------GCUGGAGCC--AUAGCA- -5'
11970 5' -54.7 NC_003278.1 + 10210 1.07 0.000929
Target:  5'- cCGCAGCAAGGUCGACCUCGGUAUCGUc -3'
miRNA:   3'- -GCGUCGUUCCAGCUGGAGCCAUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.