Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11971 | 3' | -55.8 | NC_003278.1 | + | 9078 | 0.66 | 0.547147 |
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Target: 5'- cUCgGCGGUGCcGCCGGCAuagccgcccgggcGAggguucaccAGCGCGg -3' miRNA: 3'- -AGaUGCCGCGuCGGUUGU-------------CU---------UCGCGC- -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 13186 | 0.66 | 0.548258 |
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Target: 5'- --gACGGUGCAgGCCGcccagggcaACGGcAGCGCc -3' miRNA: 3'- agaUGCCGCGU-CGGU---------UGUCuUCGCGc -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 2170 | 0.66 | 0.556057 |
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Target: 5'- --gGCGGUGCgggaugaaggucuuGGCCAGCAuGuuGCGCu -3' miRNA: 3'- agaUGCCGCG--------------UCGGUUGU-CuuCGCGc -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 28029 | 0.66 | 0.559409 |
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Target: 5'- --gGCGGCGCAGCaCGuCGGccuuGAGCucGCGg -3' miRNA: 3'- agaUGCCGCGUCG-GUuGUC----UUCG--CGC- -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 19613 | 0.66 | 0.559409 |
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Target: 5'- cCUGCGcGCGCAGauCCAGgCGGccaauGGCGCc -3' miRNA: 3'- aGAUGC-CGCGUC--GGUU-GUCu----UCGCGc -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 26660 | 0.66 | 0.559409 |
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Target: 5'- --gGCGGCGCAuucgcguccGCCAGgGuAGGCGCc -3' miRNA: 3'- agaUGCCGCGU---------CGGUUgUcUUCGCGc -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 6505 | 0.66 | 0.559409 |
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Target: 5'- -gUACGGCugGUAGaCCGGCAGcagcucgaccuuGAGCGCu -3' miRNA: 3'- agAUGCCG--CGUC-GGUUGUC------------UUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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