Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11971 | 3' | -55.8 | NC_003278.1 | + | 14783 | 0.67 | 0.501211 |
Target: 5'- gCUACGGCaucacggacgcacuGCAuGCCAGC-GAGGCGg- -3' miRNA: 3'- aGAUGCCG--------------CGU-CGGUUGuCUUCGCgc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 16073 | 0.68 | 0.402555 |
Target: 5'- --aGCGuGCacguucacucuGCAGCgAGCAGggGCGUGa -3' miRNA: 3'- agaUGC-CG-----------CGUCGgUUGUCuuCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 16737 | 0.67 | 0.504438 |
Target: 5'- gCUGCaGGCGUAccgccGCCAACu---GCGCGa -3' miRNA: 3'- aGAUG-CCGCGU-----CGGUUGucuuCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 17631 | 0.66 | 0.537178 |
Target: 5'- gUCaACGGCGUGaCCGGCAucAGCGCc -3' miRNA: 3'- -AGaUGCCGCGUcGGUUGUcuUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 17800 | 0.67 | 0.459106 |
Target: 5'- aCUACacccgcaccgcccaGGUGCuGGCCGACAcuaucgccGAAGCGCa -3' miRNA: 3'- aGAUG--------------CCGCG-UCGGUUGU--------CUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 18399 | 0.7 | 0.33106 |
Target: 5'- -gUACGGCGCAgucaguGCCAACGGcgucaugcuGCGCu -3' miRNA: 3'- agAUGCCGCGU------CGGUUGUCuu-------CGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19445 | 0.67 | 0.483097 |
Target: 5'- cCUGuuGCGCGGCCAGCGc-GGUGCu -3' miRNA: 3'- aGAUgcCGCGUCGGUUGUcuUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19613 | 0.66 | 0.559409 |
Target: 5'- cCUGCGcGCGCAGauCCAGgCGGccaauGGCGCc -3' miRNA: 3'- aGAUGC-CGCGUC--GGUU-GUCu----UCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19626 | 0.7 | 0.314711 |
Target: 5'- gUUGCgGGUGCugAGCCGGCGuugcuGAGGCGCGu -3' miRNA: 3'- aGAUG-CCGCG--UCGGUUGU-----CUUCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19660 | 0.67 | 0.483097 |
Target: 5'- --cGCaGCGCuuacgcaaccucAGCCAgcaGCAGGAGCGCc -3' miRNA: 3'- agaUGcCGCG------------UCGGU---UGUCUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19796 | 0.66 | 0.515261 |
Target: 5'- ---cCGGUGcCGGCCAgcGCGGcAGCGCu -3' miRNA: 3'- agauGCCGC-GUCGGU--UGUCuUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 21413 | 0.73 | 0.2114 |
Target: 5'- --cGCGGCGCcGCCGACgcgcuGGAcGGCGCGc -3' miRNA: 3'- agaUGCCGCGuCGGUUG-----UCU-UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 22950 | 0.69 | 0.365603 |
Target: 5'- cCUGCGGCcgguggcgGCAagacuGCCAGCGGccuGGCGCu -3' miRNA: 3'- aGAUGCCG--------CGU-----CGGUUGUCu--UCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 23237 | 0.67 | 0.504438 |
Target: 5'- aCU-CGGCGCGGgCGGCGcgcaGGGCGCu -3' miRNA: 3'- aGAuGCCGCGUCgGUUGUc---UUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 26660 | 0.66 | 0.559409 |
Target: 5'- --gGCGGCGCAuucgcguccGCCAGgGuAGGCGCc -3' miRNA: 3'- agaUGCCGCGU---------CGGUUgUcUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 28029 | 0.66 | 0.559409 |
Target: 5'- --gGCGGCGCAGCaCGuCGGccuuGAGCucGCGg -3' miRNA: 3'- agaUGCCGCGUCG-GUuGUC----UUCG--CGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 28583 | 0.7 | 0.314711 |
Target: 5'- --cACGGCGUcgauGCCGugguGCAGcAGCGCGa -3' miRNA: 3'- agaUGCCGCGu---CGGU----UGUCuUCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 29213 | 0.66 | 0.514175 |
Target: 5'- --cGCGGCG--GCCAGCgaguucaAGAAGCGCc -3' miRNA: 3'- agaUGCCGCguCGGUUG-------UCUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 31620 | 0.67 | 0.461168 |
Target: 5'- gCUGCGGCcugggcgGCGGCgCcGCAGGcuucaaccgGGCGCGu -3' miRNA: 3'- aGAUGCCG-------CGUCG-GuUGUCU---------UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 31681 | 0.75 | 0.155435 |
Target: 5'- cCUGCGGCGCcGCCGcccaggccgcaGCAGAAGUGg- -3' miRNA: 3'- aGAUGCCGCGuCGGU-----------UGUCUUCGCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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