Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11971 | 3' | -55.8 | NC_003278.1 | + | 32147 | 0.72 | 0.24873 |
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Target: 5'- aCUGCGGCGagcugggcggucUGGCCcagucGCGGAAGCGCu -3' miRNA: 3'- aGAUGCCGC------------GUCGGu----UGUCUUCGCGc -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 32361 | 0.69 | 0.374619 |
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Target: 5'- cCUGgcacUGGUGCgAGCCGGCAGcgacuGGCGCa -3' miRNA: 3'- aGAU----GCCGCG-UCGGUUGUCu----UCGCGc -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 32639 | 0.7 | 0.330228 |
|
Target: 5'- --aGCGGCGCAcGCCGuacugcugguauuGCAGGgcguuugccGGCGCGc -3' miRNA: 3'- agaUGCCGCGU-CGGU-------------UGUCU---------UCGCGC- -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 32941 | 0.67 | 0.4622 |
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Target: 5'- aCUACGGCGUAGuuggguucgaCCAAUccgccGGCGCGg -3' miRNA: 3'- aGAUGCCGCGUC----------GGUUGucu--UCGCGC- -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 33263 | 0.75 | 0.155435 |
|
Target: 5'- cCU-CGGcCGCAGCCGGCGGAAcCGCa -3' miRNA: 3'- aGAuGCC-GCGUCGGUUGUCUUcGCGc -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 33908 | 0.67 | 0.483097 |
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Target: 5'- --gGCuGGUGUAGCCG-CGGAAGcCGCu -3' miRNA: 3'- agaUG-CCGCGUCGGUuGUCUUC-GCGc -5' |
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| 11971 | 3' | -55.8 | NC_003278.1 | + | 35529 | 0.75 | 0.13825 |
|
Target: 5'- uUCUGCGGacccCAGCCAGCAGGcuuggcgGGCGCu -3' miRNA: 3'- -AGAUGCCgc--GUCGGUUGUCU-------UCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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