Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11971 | 3' | -55.8 | NC_003278.1 | + | 19445 | 0.67 | 0.483097 |
Target: 5'- cCUGuuGCGCGGCCAGCGc-GGUGCu -3' miRNA: 3'- aGAUgcCGCGUCGGUUGUcuUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 18399 | 0.7 | 0.33106 |
Target: 5'- -gUACGGCGCAgucaguGCCAACGGcgucaugcuGCGCu -3' miRNA: 3'- agAUGCCGCGU------CGGUUGUCuu-------CGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 17800 | 0.67 | 0.459106 |
Target: 5'- aCUACacccgcaccgcccaGGUGCuGGCCGACAcuaucgccGAAGCGCa -3' miRNA: 3'- aGAUG--------------CCGCG-UCGGUUGU--------CUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 17631 | 0.66 | 0.537178 |
Target: 5'- gUCaACGGCGUGaCCGGCAucAGCGCc -3' miRNA: 3'- -AGaUGCCGCGUcGGUUGUcuUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 16737 | 0.67 | 0.504438 |
Target: 5'- gCUGCaGGCGUAccgccGCCAACu---GCGCGa -3' miRNA: 3'- aGAUG-CCGCGU-----CGGUUGucuuCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 16073 | 0.68 | 0.402555 |
Target: 5'- --aGCGuGCacguucacucuGCAGCgAGCAGggGCGUGa -3' miRNA: 3'- agaUGC-CG-----------CGUCGgUUGUCuuCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 14783 | 0.67 | 0.501211 |
Target: 5'- gCUACGGCaucacggacgcacuGCAuGCCAGC-GAGGCGg- -3' miRNA: 3'- aGAUGCCG--------------CGU-CGGUUGuCUUCGCgc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 13186 | 0.66 | 0.548258 |
Target: 5'- --gACGGUGCAgGCCGcccagggcaACGGcAGCGCc -3' miRNA: 3'- agaUGCCGCGU-CGGU---------UGUCuUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 10864 | 0.71 | 0.291345 |
Target: 5'- gCUGC-GCGUAGCUGACuucGGGAGCGCc -3' miRNA: 3'- aGAUGcCGCGUCGGUUG---UCUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 10593 | 0.68 | 0.392159 |
Target: 5'- --gACGGCaGCgccuaugAGCCAcGCaAGAAGCGCGa -3' miRNA: 3'- agaUGCCG-CG-------UCGGU-UG-UCUUCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 10546 | 1.09 | 0.000456 |
Target: 5'- aUCUACGGCGCAGCCAACAGAAGCGCGu -3' miRNA: 3'- -AGAUGCCGCGUCGGUUGUCUUCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 10000 | 0.67 | 0.493715 |
Target: 5'- ---cCGGCacgGCGGCgAGCAGAuGCGCu -3' miRNA: 3'- agauGCCG---CGUCGgUUGUCUuCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 9078 | 0.66 | 0.547147 |
Target: 5'- cUCgGCGGUGCcGCCGGCAuagccgcccgggcGAggguucaccAGCGCGg -3' miRNA: 3'- -AGaUGCCGCGuCGGUUGU-------------CU---------UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 8671 | 0.67 | 0.451931 |
Target: 5'- aCUuCGGCGCcGCC-ACcGAGGaCGCGg -3' miRNA: 3'- aGAuGCCGCGuCGGuUGuCUUC-GCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 8444 | 0.69 | 0.36471 |
Target: 5'- gCUGCGGCggaagcgggcgccGCAGCgcuggUAGCAGAccaggcgcAGCGCGg -3' miRNA: 3'- aGAUGCCG-------------CGUCG-----GUUGUCU--------UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 7775 | 0.68 | 0.393096 |
Target: 5'- aCUACGGuCGCAccGCCGGCGugaccGAGGCGg- -3' miRNA: 3'- aGAUGCC-GCGU--CGGUUGU-----CUUCGCgc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 6687 | 0.74 | 0.169212 |
Target: 5'- cUCUuCGGCgaugacGCAGCCGGCGGuacGCGCGa -3' miRNA: 3'- -AGAuGCCG------CGUCGGUUGUCuu-CGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 6505 | 0.66 | 0.559409 |
Target: 5'- -gUACGGCugGUAGaCCGGCAGcagcucgaccuuGAGCGCu -3' miRNA: 3'- agAUGCCG--CGUC-GGUUGUC------------UUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 6471 | 0.66 | 0.526177 |
Target: 5'- aUUUcCGGCGUgcugcaGGCCGGCAaGGGCGCc -3' miRNA: 3'- -AGAuGCCGCG------UCGGUUGUcUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 6028 | 0.66 | 0.537178 |
Target: 5'- --gGCGGCcuGCcGCCggUGGAAGUGCc -3' miRNA: 3'- agaUGCCG--CGuCGGuuGUCUUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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