miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11971 3' -55.8 NC_003278.1 + 9078 0.66 0.547147
Target:  5'- cUCgGCGGUGCcGCCGGCAuagccgcccgggcGAggguucaccAGCGCGg -3'
miRNA:   3'- -AGaUGCCGCGuCGGUUGU-------------CU---------UCGCGC- -5'
11971 3' -55.8 NC_003278.1 + 19796 0.66 0.515261
Target:  5'- ---cCGGUGcCGGCCAgcGCGGcAGCGCu -3'
miRNA:   3'- agauGCCGC-GUCGGU--UGUCuUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 23237 0.67 0.504438
Target:  5'- aCU-CGGCGCGGgCGGCGcgcaGGGCGCu -3'
miRNA:   3'- aGAuGCCGCGUCgGUUGUc---UUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 10000 0.67 0.493715
Target:  5'- ---cCGGCacgGCGGCgAGCAGAuGCGCu -3'
miRNA:   3'- agauGCCG---CGUCGgUUGUCUuCGCGc -5'
11971 3' -55.8 NC_003278.1 + 19445 0.67 0.483097
Target:  5'- cCUGuuGCGCGGCCAGCGc-GGUGCu -3'
miRNA:   3'- aGAUgcCGCGUCGGUUGUcuUCGCGc -5'
11971 3' -55.8 NC_003278.1 + 33908 0.67 0.483097
Target:  5'- --gGCuGGUGUAGCCG-CGGAAGcCGCu -3'
miRNA:   3'- agaUG-CCGCGUCGGUuGUCUUC-GCGc -5'
11971 3' -55.8 NC_003278.1 + 35529 0.75 0.13825
Target:  5'- uUCUGCGGacccCAGCCAGCAGGcuuggcgGGCGCu -3'
miRNA:   3'- -AGAUGCCgc--GUCGGUUGUCU-------UCGCGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.