Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11971 | 3' | -55.8 | NC_003278.1 | + | 1640 | 0.67 | 0.471546 |
Target: 5'- cCUGCGGgucuaucCGCAGCUGAUGGggGUGg- -3' miRNA: 3'- aGAUGCC-------GCGUCGGUUGUCuuCGCgc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 32941 | 0.67 | 0.4622 |
Target: 5'- aCUACGGCGUAGuuggguucgaCCAAUccgccGGCGCGg -3' miRNA: 3'- aGAUGCCGCGUC----------GGUUGucu--UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 31620 | 0.67 | 0.461168 |
Target: 5'- gCUGCGGCcugggcgGCGGCgCcGCAGGcuucaaccgGGCGCGu -3' miRNA: 3'- aGAUGCCG-------CGUCG-GuUGUCU---------UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 17800 | 0.67 | 0.459106 |
Target: 5'- aCUACacccgcaccgcccaGGUGCuGGCCGACAcuaucgccGAAGCGCa -3' miRNA: 3'- aGAUG--------------CCGCG-UCGGUUGU--------CUUCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 2035 | 0.67 | 0.451931 |
Target: 5'- --cGCGGCGCauguacuuGGCCAGCGGcgccuGCaGCGg -3' miRNA: 3'- agaUGCCGCG--------UCGGUUGUCuu---CG-CGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 3631 | 0.67 | 0.451931 |
Target: 5'- gCUugGGCcuuGCuGGCCGACAGGAauaucugguuGCGCc -3' miRNA: 3'- aGAugCCG---CG-UCGGUUGUCUU----------CGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 8671 | 0.67 | 0.451931 |
Target: 5'- aCUuCGGCGCcGCC-ACcGAGGaCGCGg -3' miRNA: 3'- aGAuGCCGCGuCGGuUGuCUUC-GCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 16073 | 0.68 | 0.402555 |
Target: 5'- --aGCGuGCacguucacucuGCAGCgAGCAGggGCGUGa -3' miRNA: 3'- agaUGC-CG-----------CGUCGgUUGUCuuCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 7775 | 0.68 | 0.393096 |
Target: 5'- aCUACGGuCGCAccGCCGGCGugaccGAGGCGg- -3' miRNA: 3'- aGAUGCC-GCGU--CGGUUGU-----CUUCGCgc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 4356 | 0.68 | 0.392159 |
Target: 5'- --cGCGcGCGCGGCCcagcaaucaAGCGGGauuguagGGCGCGg -3' miRNA: 3'- agaUGC-CGCGUCGG---------UUGUCU-------UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 10593 | 0.68 | 0.392159 |
Target: 5'- --gACGGCaGCgccuaugAGCCAcGCaAGAAGCGCGa -3' miRNA: 3'- agaUGCCG-CG-------UCGGU-UG-UCUUCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 5744 | 0.69 | 0.383784 |
Target: 5'- --gGCGGCGCGGUUggUGGuAGcCGCGg -3' miRNA: 3'- agaUGCCGCGUCGGuuGUCuUC-GCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 32361 | 0.69 | 0.374619 |
Target: 5'- cCUGgcacUGGUGCgAGCCGGCAGcgacuGGCGCa -3' miRNA: 3'- aGAU----GCCGCG-UCGGUUGUCu----UCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 22950 | 0.69 | 0.365603 |
Target: 5'- cCUGCGGCcgguggcgGCAagacuGCCAGCGGccuGGCGCu -3' miRNA: 3'- aGAUGCCG--------CGU-----CGGUUGUCu--UCGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 8444 | 0.69 | 0.36471 |
Target: 5'- gCUGCGGCggaagcgggcgccGCAGCgcuggUAGCAGAccaggcgcAGCGCGg -3' miRNA: 3'- aGAUGCCG-------------CGUCG-----GUUGUCU--------UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 18399 | 0.7 | 0.33106 |
Target: 5'- -gUACGGCGCAgucaguGCCAACGGcgucaugcuGCGCu -3' miRNA: 3'- agAUGCCGCGU------CGGUUGUCuu-------CGCGc -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 32639 | 0.7 | 0.330228 |
Target: 5'- --aGCGGCGCAcGCCGuacugcugguauuGCAGGgcguuugccGGCGCGc -3' miRNA: 3'- agaUGCCGCGU-CGGU-------------UGUCU---------UCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 19626 | 0.7 | 0.314711 |
Target: 5'- gUUGCgGGUGCugAGCCGGCGuugcuGAGGCGCGu -3' miRNA: 3'- aGAUG-CCGCG--UCGGUUGU-----CUUCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 28583 | 0.7 | 0.314711 |
Target: 5'- --cACGGCGUcgauGCCGugguGCAGcAGCGCGa -3' miRNA: 3'- agaUGCCGCGu---CGGU----UGUCuUCGCGC- -5' |
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11971 | 3' | -55.8 | NC_003278.1 | + | 10864 | 0.71 | 0.291345 |
Target: 5'- gCUGC-GCGUAGCUGACuucGGGAGCGCc -3' miRNA: 3'- aGAUGcCGCGUCGGUUG---UCUUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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