miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11971 5' -61 NC_003278.1 + 21346 0.68 0.20753
Target:  5'- aAGCGCGccguCCagcgCGuCGGCGGCGCCg-- -3'
miRNA:   3'- -UCGCGUu---GGg---GCuGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 6962 0.68 0.20753
Target:  5'- gAGCGUAccccgcGCCCCGcCGGCuGGgGCCg-- -3'
miRNA:   3'- -UCGCGU------UGGGGCuGCCG-UCgCGGaua -5'
11971 5' -61 NC_003278.1 + 3378 0.68 0.202029
Target:  5'- gGGCGUcgagaaguAGgUCCGGCGGUAGCGCUUc- -3'
miRNA:   3'- -UCGCG--------UUgGGGCUGCCGUCGCGGAua -5'
11971 5' -61 NC_003278.1 + 9602 0.68 0.196655
Target:  5'- aAGgGCGGCCUCGAgGGCcgugauGGUGCCg-- -3'
miRNA:   3'- -UCgCGUUGGGGCUgCCG------UCGCGGaua -5'
11971 5' -61 NC_003278.1 + 23348 0.68 0.196655
Target:  5'- cAGCcuCAGCgCCGACGGCGGUuacaucaccaGCCUGg -3'
miRNA:   3'- -UCGc-GUUGgGGCUGCCGUCG----------CGGAUa -5'
11971 5' -61 NC_003278.1 + 21847 0.68 0.196655
Target:  5'- gAGCGCGAacgcaaCaaGGCGGC-GCGCCUGc -3'
miRNA:   3'- -UCGCGUUg-----GggCUGCCGuCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 32469 0.69 0.179799
Target:  5'- cGCGCAGguagccguCCUCGACGGCGaggucguucaggcuGCGCCa-- -3'
miRNA:   3'- uCGCGUU--------GGGGCUGCCGU--------------CGCGGaua -5'
11971 5' -61 NC_003278.1 + 15359 0.69 0.171625
Target:  5'- uGGCGguGgCCUGACGGCAGCagacauuCCUGc -3'
miRNA:   3'- -UCGCguUgGGGCUGCCGUCGc------GGAUa -5'
11971 5' -61 NC_003278.1 + 28596 0.69 0.166973
Target:  5'- cGCGaCAGCCCgUGGCGGCaAGCuGCCg-- -3'
miRNA:   3'- uCGC-GUUGGG-GCUGCCG-UCG-CGGaua -5'
11971 5' -61 NC_003278.1 + 8730 0.69 0.166973
Target:  5'- cGCGU--CCUCGGUGGCGGCGCCg-- -3'
miRNA:   3'- uCGCGuuGGGGCUGCCGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 27898 0.69 0.162435
Target:  5'- cGCGCAGCCCCuGCGGCguauAGCGgUa-- -3'
miRNA:   3'- uCGCGUUGGGGcUGCCG----UCGCgGaua -5'
11971 5' -61 NC_003278.1 + 19605 0.69 0.161987
Target:  5'- gAGCGCGACCugcgcgcgcagauCCaGGCGGCcaauGGCGCCa-- -3'
miRNA:   3'- -UCGCGUUGG-------------GG-CUGCCG----UCGCGGaua -5'
11971 5' -61 NC_003278.1 + 15977 0.69 0.161987
Target:  5'- cAGCGCcaguacaGACCgCCGGCGGCGuaGCCa-- -3'
miRNA:   3'- -UCGCG-------UUGG-GGCUGCCGUcgCGGaua -5'
11971 5' -61 NC_003278.1 + 30911 0.7 0.158008
Target:  5'- uGCGCGGCCUCGACc-CAGCGCUg-- -3'
miRNA:   3'- uCGCGUUGGGGCUGccGUCGCGGaua -5'
11971 5' -61 NC_003278.1 + 19960 0.7 0.158008
Target:  5'- gGGUGCGGgCCUGuuGCcGCAGCGCCUGc -3'
miRNA:   3'- -UCGCGUUgGGGC--UGcCGUCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 9015 0.7 0.157571
Target:  5'- cGgGCGGCUaugCCGGCGGCaccgccgagcaccAGCGCCUGg -3'
miRNA:   3'- uCgCGUUGG---GGCUGCCG-------------UCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 17329 0.7 0.15369
Target:  5'- cGCGCAuCCUCGGCGuGCcGgGCCUGg -3'
miRNA:   3'- uCGCGUuGGGGCUGC-CGuCgCGGAUa -5'
11971 5' -61 NC_003278.1 + 26593 0.7 0.145374
Target:  5'- cGGCGCcuACCCUGGCGGacgcgaauGCGCCg-- -3'
miRNA:   3'- -UCGCGu-UGGGGCUGCCgu------CGCGGaua -5'
11971 5' -61 NC_003278.1 + 30232 0.7 0.144969
Target:  5'- cGCGCAgaugaugGCCCugguCGACGcGCuGCGCCUGg -3'
miRNA:   3'- uCGCGU-------UGGG----GCUGC-CGuCGCGGAUa -5'
11971 5' -61 NC_003278.1 + 13188 0.7 0.137471
Target:  5'- cGGUGCAggccGCCCagggcaACGGCAGCGCCc-- -3'
miRNA:   3'- -UCGCGU----UGGGgc----UGCCGUCGCGGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.