Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11974 | 3' | -57.2 | NC_003278.1 | + | 12562 | 0.66 | 0.5149 |
Target: 5'- gGCCAGaACC-UgGCCGGCcAGGugcUCAUGg -3' miRNA: 3'- -UGGUC-UGGcAgUGGCCGuUCC---AGUGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 7867 | 0.66 | 0.5149 |
Target: 5'- gGCCAGGCCGugguUCGCCucgaGGaccgccucGGUCACGc -3' miRNA: 3'- -UGGUCUGGC----AGUGG----CCguu-----CCAGUGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 32724 | 0.66 | 0.508524 |
Target: 5'- aGCCGGcACCGUgaucgcggccaguacUACCGGCcAGGGugcauuugcugUCGCGg -3' miRNA: 3'- -UGGUC-UGGCA---------------GUGGCCG-UUCC-----------AGUGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 8104 | 0.66 | 0.504291 |
Target: 5'- gGCCAG-CCaggCGCCGaGCAGGG-CACc -3' miRNA: 3'- -UGGUCuGGca-GUGGC-CGUUCCaGUGc -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 7738 | 0.66 | 0.493779 |
Target: 5'- aACCAGAgCGaCACCGuCGAGG-CGCu -3' miRNA: 3'- -UGGUCUgGCaGUGGCcGUUCCaGUGc -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 32469 | 0.66 | 0.483367 |
Target: 5'- cGCgCAGguaGCCGUCcucgaCGGCGAGGUCGu- -3' miRNA: 3'- -UG-GUC---UGGCAGug---GCCGUUCCAGUgc -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 11141 | 0.66 | 0.483367 |
Target: 5'- ------aCGUUGCCGGCGAGGUUGCa -3' miRNA: 3'- uggucugGCAGUGGCCGUUCCAGUGc -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 21542 | 0.66 | 0.483367 |
Target: 5'- gUCAGGCUGUCGCCGGCc---UCgACGg -3' miRNA: 3'- uGGUCUGGCAGUGGCCGuuccAG-UGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 19678 | 0.66 | 0.473062 |
Target: 5'- cGCCAuuGGCCGccuggaUCugCGcGCGcAGGUCGCGc -3' miRNA: 3'- -UGGU--CUGGC------AGugGC-CGU-UCCAGUGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 9529 | 0.67 | 0.452793 |
Target: 5'- cGCCAGGCCGgCACCaucacGGCccucGAGGcCGCc -3' miRNA: 3'- -UGGUCUGGCaGUGG-----CCG----UUCCaGUGc -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 5975 | 0.67 | 0.452793 |
Target: 5'- gACCAGcucgcgGCCGaggaUCACCaccaGGCccGGGUCACGg -3' miRNA: 3'- -UGGUC------UGGC----AGUGG----CCGu-UCCAGUGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 2326 | 0.67 | 0.433006 |
Target: 5'- uGCCccGGCCGUCgagcACCGGCAucGGaUCACc -3' miRNA: 3'- -UGGu-CUGGCAG----UGGCCGUu-CC-AGUGc -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 20903 | 0.67 | 0.433006 |
Target: 5'- cAUCGGGCCGagaaUGCCGGCGAgGGUgAUGg -3' miRNA: 3'- -UGGUCUGGCa---GUGGCCGUU-CCAgUGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 22870 | 0.67 | 0.423303 |
Target: 5'- cGCCAGcGCCGgcgcgagCACCGGCuucAGGUUguugccgaggGCGa -3' miRNA: 3'- -UGGUC-UGGCa------GUGGCCGu--UCCAG----------UGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 23492 | 0.67 | 0.423303 |
Target: 5'- uGCCGGugUaGUCGCCgccggugucgucGGCcAGGUCGCu -3' miRNA: 3'- -UGGUCugG-CAGUGG------------CCGuUCCAGUGc -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 8043 | 0.67 | 0.423303 |
Target: 5'- cCCAGGCCGaggcccaugauggCGCCGGCcguggcgguggugguGAGGUCAg- -3' miRNA: 3'- uGGUCUGGCa------------GUGGCCG---------------UUCCAGUgc -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 12270 | 0.68 | 0.404295 |
Target: 5'- cACCGuGACC-UUGCCGGUGAcGGUCugGu -3' miRNA: 3'- -UGGU-CUGGcAGUGGCCGUU-CCAGugC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 31787 | 0.68 | 0.404295 |
Target: 5'- gGCCAGGCgcucgaaGUCgcggagGCCGGCcGGGUcCACGu -3' miRNA: 3'- -UGGUCUGg------CAG------UGGCCGuUCCA-GUGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 8889 | 0.68 | 0.404295 |
Target: 5'- -aUAGAUCGUCGCCaGCGgcAGGUCgagGCGa -3' miRNA: 3'- ugGUCUGGCAGUGGcCGU--UCCAG---UGC- -5' |
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11974 | 3' | -57.2 | NC_003278.1 | + | 14280 | 0.68 | 0.394995 |
Target: 5'- cGCCGGGCgCGcCGCCGGC---GUCACc -3' miRNA: 3'- -UGGUCUG-GCaGUGGCCGuucCAGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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