miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11974 5' -56.1 NC_003278.1 + 30569 0.66 0.507551
Target:  5'- ----aGGUCGCgCAGGGuugccGCGUCGGCCa -3'
miRNA:   3'- cugcaCUAGCG-GUUCC-----CGUAGUCGGa -5'
11974 5' -56.1 NC_003278.1 + 7977 0.68 0.395513
Target:  5'- cACGgccgCGCCAucauGGGCcUCGGCCUg -3'
miRNA:   3'- cUGCacuaGCGGUu---CCCGuAGUCGGA- -5'
11974 5' -56.1 NC_003278.1 + 6291 0.69 0.358901
Target:  5'- cGCGUGAcCGCCGcucaAGaGGCggCGGCCa -3'
miRNA:   3'- cUGCACUaGCGGU----UC-CCGuaGUCGGa -5'
11974 5' -56.1 NC_003278.1 + 23238 0.69 0.341505
Target:  5'- uACGcGcUCGCCAGGGGC--CGGCCg -3'
miRNA:   3'- cUGCaCuAGCGGUUCCCGuaGUCGGa -5'
11974 5' -56.1 NC_003278.1 + 32346 0.7 0.31657
Target:  5'- cGGCGUcGAuaUCGCCGGGcagcGGCAUgCGGCCg -3'
miRNA:   3'- -CUGCA-CU--AGCGGUUC----CCGUA-GUCGGa -5'
11974 5' -56.1 NC_003278.1 + 8721 0.71 0.270883
Target:  5'- gGAC-UGGUCGCCGAuGGCAUCgcuGGCCc -3'
miRNA:   3'- -CUGcACUAGCGGUUcCCGUAG---UCGGa -5'
11974 5' -56.1 NC_003278.1 + 26818 0.71 0.2501
Target:  5'- cGACcUGuaCGCCAGGGGCGUC-GCCa -3'
miRNA:   3'- -CUGcACuaGCGGUUCCCGUAGuCGGa -5'
11974 5' -56.1 NC_003278.1 + 9662 0.71 0.243471
Target:  5'- aACGUGAcgaugaacccuaUCGCCAGuGGGCugacCAGCCUc -3'
miRNA:   3'- cUGCACU------------AGCGGUU-CCCGua--GUCGGA- -5'
11974 5' -56.1 NC_003278.1 + 10765 0.76 0.117006
Target:  5'- -cCGUGAUCGCCu-GGGCGUC-GCCc -3'
miRNA:   3'- cuGCACUAGCGGuuCCCGUAGuCGGa -5'
11974 5' -56.1 NC_003278.1 + 21637 0.77 0.104076
Target:  5'- uGGCGUGAUCGC--AGGGCGggAGCCUc -3'
miRNA:   3'- -CUGCACUAGCGguUCCCGUagUCGGA- -5'
11974 5' -56.1 NC_003278.1 + 12241 1.08 0.00045
Target:  5'- cGACGUGAUCGCCAAGGGCAUCAGCCUg -3'
miRNA:   3'- -CUGCACUAGCGGUUCCCGUAGUCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.