miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11975 3' -53.9 NC_003278.1 + 7851 0.66 0.706511
Target:  5'- gCCUCGagGAC-CGCcUCGGUcacGCCgGCg -3'
miRNA:   3'- aGGAGUg-UUGaGCGuAGCCA---UGGgCG- -5'
11975 3' -53.9 NC_003278.1 + 30738 0.66 0.695332
Target:  5'- cUCCUUugGGgUUGCAguucCGGcgUugCCGCg -3'
miRNA:   3'- -AGGAGugUUgAGCGUa---GCC--AugGGCG- -5'
11975 3' -53.9 NC_003278.1 + 8014 0.66 0.684088
Target:  5'- cCCUUccgguugacgGCGGCaUGCuguUCGGUGCCCuGCu -3'
miRNA:   3'- aGGAG----------UGUUGaGCGu--AGCCAUGGG-CG- -5'
11975 3' -53.9 NC_003278.1 + 30579 0.66 0.67279
Target:  5'- cUCUUUcaGCAGgUCGCGcagGGUugCCGCg -3'
miRNA:   3'- -AGGAG--UGUUgAGCGUag-CCAugGGCG- -5'
11975 3' -53.9 NC_003278.1 + 6687 0.66 0.67279
Target:  5'- cUCUUCgGCGAUgaCGCAgccggCGGUACgCGCg -3'
miRNA:   3'- -AGGAG-UGUUGa-GCGUa----GCCAUGgGCG- -5'
11975 3' -53.9 NC_003278.1 + 1788 0.67 0.643254
Target:  5'- uUCCUCAUucuguGCg-GCGUCGGUcauguagaggaugaaGCCgGCg -3'
miRNA:   3'- -AGGAGUGu----UGagCGUAGCCA---------------UGGgCG- -5'
11975 3' -53.9 NC_003278.1 + 21043 0.67 0.604547
Target:  5'- gUCCUgGCAAUugccgccgUCGUggCGGUGCUgGCc -3'
miRNA:   3'- -AGGAgUGUUG--------AGCGuaGCCAUGGgCG- -5'
11975 3' -53.9 NC_003278.1 + 6700 0.67 0.5932
Target:  5'- aCCUUGCGAcCUUGCAUCGcacccuCCUGCu -3'
miRNA:   3'- aGGAGUGUU-GAGCGUAGCcau---GGGCG- -5'
11975 3' -53.9 NC_003278.1 + 4866 0.67 0.5932
Target:  5'- gUCUUGCGGCUgGCGagGGU-CCCGUu -3'
miRNA:   3'- aGGAGUGUUGAgCGUagCCAuGGGCG- -5'
11975 3' -53.9 NC_003278.1 + 9541 0.67 0.5932
Target:  5'- uUCCUCGcCAACUCGgccugggcCAggCGG-GCCUGCg -3'
miRNA:   3'- -AGGAGU-GUUGAGC--------GUa-GCCaUGGGCG- -5'
11975 3' -53.9 NC_003278.1 + 14683 0.68 0.570622
Target:  5'- gCCUUAcCAGcCUCcgGCGUgGGUGCCgGCa -3'
miRNA:   3'- aGGAGU-GUU-GAG--CGUAgCCAUGGgCG- -5'
11975 3' -53.9 NC_003278.1 + 16734 0.68 0.548258
Target:  5'- aCCUCG-AGCUCGUcgCGGUgACgUGCg -3'
miRNA:   3'- aGGAGUgUUGAGCGuaGCCA-UGgGCG- -5'
11975 3' -53.9 NC_003278.1 + 8118 0.68 0.548258
Target:  5'- aUCCUgC-CGACcUGCGUCGGcUACCUGUu -3'
miRNA:   3'- -AGGA-GuGUUGaGCGUAGCC-AUGGGCG- -5'
11975 3' -53.9 NC_003278.1 + 6007 0.68 0.548258
Target:  5'- aUCCugUCGCAGaagCGCAUgGGcgGCCUGCc -3'
miRNA:   3'- -AGG--AGUGUUga-GCGUAgCCa-UGGGCG- -5'
11975 3' -53.9 NC_003278.1 + 21044 0.69 0.493714
Target:  5'- -gCUCACGACgCGCAgggCGGUcACCaGCg -3'
miRNA:   3'- agGAGUGUUGaGCGUa--GCCA-UGGgCG- -5'
11975 3' -53.9 NC_003278.1 + 30055 0.69 0.483096
Target:  5'- gCUUCACGAUacgggucaugaUCGCuUCGGagGCCUGCa -3'
miRNA:   3'- aGGAGUGUUG-----------AGCGuAGCCa-UGGGCG- -5'
11975 3' -53.9 NC_003278.1 + 31326 0.69 0.47259
Target:  5'- gCCUCuucuuCAGCgccgCGCGg-GGUGCUCGCg -3'
miRNA:   3'- aGGAGu----GUUGa---GCGUagCCAUGGGCG- -5'
11975 3' -53.9 NC_003278.1 + 19561 0.7 0.451931
Target:  5'- gCCUCAgCAACgccgGCAUCaGcACCCGCa -3'
miRNA:   3'- aGGAGU-GUUGag--CGUAGcCaUGGGCG- -5'
11975 3' -53.9 NC_003278.1 + 20573 0.7 0.441788
Target:  5'- cCCUCgACGGCgCGCAUCagGGUGCCgaaGCu -3'
miRNA:   3'- aGGAG-UGUUGaGCGUAG--CCAUGGg--CG- -5'
11975 3' -53.9 NC_003278.1 + 13716 0.71 0.374619
Target:  5'- uUCCacaguuggCGCAAUg-GgAUCGGUACCCGCu -3'
miRNA:   3'- -AGGa-------GUGUUGagCgUAGCCAUGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.