Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11975 | 5' | -55.4 | NC_003278.1 | + | 22049 | 0.67 | 0.503865 |
Target: 5'- gACGCGAucacccugcccggcGUGCuGCuGCCGGagcugGCCGGc -3' miRNA: 3'- -UGCGCU--------------UAUGcCGuCGGUCaa---CGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 23228 | 0.67 | 0.496389 |
Target: 5'- cACGCucagcUACGcGCucGCCAGggGCCGGc -3' miRNA: 3'- -UGCGcuu--AUGC-CGu-CGGUCaaCGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 33184 | 0.68 | 0.485797 |
Target: 5'- gGCGCGAgcggaucggcaAUGCGGUuccGCCGGcugcgGCCGa -3' miRNA: 3'- -UGCGCU-----------UAUGCCGu--CGGUCaa---CGGCc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 22736 | 0.68 | 0.485797 |
Target: 5'- aGCGCGAacgcaGUugGaGCAGCCcgaAGacGCUGGg -3' miRNA: 3'- -UGCGCU-----UAugC-CGUCGG---UCaaCGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 20090 | 0.68 | 0.485797 |
Target: 5'- uCGCcc--GCGGCuGCCAGguugagcaUGCCGGg -3' miRNA: 3'- uGCGcuuaUGCCGuCGGUCa-------ACGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 29888 | 0.68 | 0.485797 |
Target: 5'- uCGCGcGUugGGCgugaccGGCCAGaagaccGCCGGc -3' miRNA: 3'- uGCGCuUAugCCG------UCGGUCaa----CGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 23048 | 0.68 | 0.475313 |
Target: 5'- -gGCGGgugagguugauGUGCGGCAgcGCCAGgccGCUGGc -3' miRNA: 3'- ugCGCU-----------UAUGCCGU--CGGUCaa-CGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 32447 | 0.68 | 0.475313 |
Target: 5'- -gGCGAGgucguucaGGCugcGCCAGUcgcUGCCGGc -3' miRNA: 3'- ugCGCUUaug-----CCGu--CGGUCA---ACGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 5752 | 0.68 | 0.434567 |
Target: 5'- -aGCGggU-UGGCGGCgCGGUUGgUGGu -3' miRNA: 3'- ugCGCuuAuGCCGUCG-GUCAACgGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 11934 | 0.69 | 0.424699 |
Target: 5'- cCGCGGcgAUGCccaaGGCAGCCA---GCCGGu -3' miRNA: 3'- uGCGCU--UAUG----CCGUCGGUcaaCGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 22900 | 0.69 | 0.405372 |
Target: 5'- -gGCGAggacuucgAUGCGGUGGCCAccGUgaaaGCCGGc -3' miRNA: 3'- ugCGCU--------UAUGCCGUCGGU--CAa---CGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 20747 | 0.69 | 0.395919 |
Target: 5'- -gGCGAGcuCGcGCAGCCAGggGCUGu -3' miRNA: 3'- ugCGCUUauGC-CGUCGGUCaaCGGCc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 22406 | 0.69 | 0.386608 |
Target: 5'- aGCGCGAcgcCGGCuauCCGG-UGCCGGu -3' miRNA: 3'- -UGCGCUuauGCCGuc-GGUCaACGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 26454 | 0.69 | 0.386608 |
Target: 5'- -gGCGAAgcccacCGcGCAGCCGuGUUGCuCGGg -3' miRNA: 3'- ugCGCUUau----GC-CGUCGGU-CAACG-GCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 20224 | 0.7 | 0.368426 |
Target: 5'- cCGCGAGUACGGCcagAGCCuGgaGaCGGu -3' miRNA: 3'- uGCGCUUAUGCCG---UCGGuCaaCgGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 17422 | 0.7 | 0.368426 |
Target: 5'- gGCGaUGAGUGCGGUAGCgAccgGCUGGg -3' miRNA: 3'- -UGC-GCUUAUGCCGUCGgUcaaCGGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 16561 | 0.7 | 0.368426 |
Target: 5'- -gGCGAggAUGGaCAGCCGGUcGCCa- -3' miRNA: 3'- ugCGCUuaUGCC-GUCGGUCAaCGGcc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 8546 | 0.7 | 0.342272 |
Target: 5'- -gGCGAcgAUGGCGuGCCAGaUGCUGa -3' miRNA: 3'- ugCGCUuaUGCCGU-CGGUCaACGGCc -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 9035 | 0.72 | 0.258084 |
Target: 5'- aGCGCGGGgaacUGuGCGGCCAGUUGgUCGGc -3' miRNA: 3'- -UGCGCUUau--GC-CGUCGGUCAAC-GGCC- -5' |
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11975 | 5' | -55.4 | NC_003278.1 | + | 3300 | 0.75 | 0.171414 |
Target: 5'- gAUGCGAu--CGGCGGCCGGcUUGCCc- -3' miRNA: 3'- -UGCGCUuauGCCGUCGGUC-AACGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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