miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11976 3' -60.8 NC_003278.1 + 32742 0.66 0.313827
Target:  5'- gGCCAGuACUa--CCGGCCAgGGUGCa- -3'
miRNA:   3'- -CGGUCuUGGaccGGCCGGU-CCACGag -5'
11976 3' -60.8 NC_003278.1 + 34267 0.66 0.313827
Target:  5'- gGCCAGAGCUaUGGCCucgcugacGCgGGGgccGCUCc -3'
miRNA:   3'- -CGGUCUUGG-ACCGGc-------CGgUCCa--CGAG- -5'
11976 3' -60.8 NC_003278.1 + 10506 0.66 0.298568
Target:  5'- uCCAGAGCCUcgaGGCUgucagccauuGGCCGGGcGCc- -3'
miRNA:   3'- cGGUCUUGGA---CCGG----------CCGGUCCaCGag -5'
11976 3' -60.8 NC_003278.1 + 6790 0.66 0.29782
Target:  5'- cGUCGGGcaugucgGCCUGGUCGGUgagcaggaGGGUGCg- -3'
miRNA:   3'- -CGGUCU-------UGGACCGGCCGg-------UCCACGag -5'
11976 3' -60.8 NC_003278.1 + 9626 0.66 0.297074
Target:  5'- gGCCuGGGCCUGGCgcucgcgggaaagggCGGCCucgagggccgugauGGUGC-Cg -3'
miRNA:   3'- -CGGuCUUGGACCG---------------GCCGGu-------------CCACGaG- -5'
11976 3' -60.8 NC_003278.1 + 2790 0.66 0.291156
Target:  5'- cGCCAGAGCCcauGCCGGU--GGUGUc- -3'
miRNA:   3'- -CGGUCUUGGac-CGGCCGguCCACGag -5'
11976 3' -60.8 NC_003278.1 + 9370 0.66 0.283889
Target:  5'- gGCCAGcGCgUGaGCCuucugcGCCAGGUGUUg -3'
miRNA:   3'- -CGGUCuUGgAC-CGGc-----CGGUCCACGAg -5'
11976 3' -60.8 NC_003278.1 + 5024 0.66 0.283889
Target:  5'- cGCCG--ACCUGGCCgaacucGGCUuGGGUGCg- -3'
miRNA:   3'- -CGGUcuUGGACCGG------CCGG-UCCACGag -5'
11976 3' -60.8 NC_003278.1 + 14069 0.67 0.269787
Target:  5'- uGCgCAGGuCCaGGCgGGUCAGGUGUc- -3'
miRNA:   3'- -CG-GUCUuGGaCCGgCCGGUCCACGag -5'
11976 3' -60.8 NC_003278.1 + 21022 0.67 0.262951
Target:  5'- aCCAGcgGGCCgaucaacaGGCCGGCCAgcaugcggaucGGUGCg- -3'
miRNA:   3'- cGGUC--UUGGa-------CCGGCCGGU-----------CCACGag -5'
11976 3' -60.8 NC_003278.1 + 14735 0.67 0.262951
Target:  5'- cGCCGGAGgCUGGUaaGGCgAuGGUGCg- -3'
miRNA:   3'- -CGGUCUUgGACCGg-CCGgU-CCACGag -5'
11976 3' -60.8 NC_003278.1 + 31262 0.67 0.256255
Target:  5'- cCCGGAgcaGCCUGGCggcgGGCCucGGGUaucuGCUCu -3'
miRNA:   3'- cGGUCU---UGGACCGg---CCGG--UCCA----CGAG- -5'
11976 3' -60.8 NC_003278.1 + 19465 0.67 0.247117
Target:  5'- aGCCAGugcuuucacccguGCCUGuuGCgCGGCCAgcgcGGUGCUg -3'
miRNA:   3'- -CGGUCu------------UGGAC--CG-GCCGGU----CCACGAg -5'
11976 3' -60.8 NC_003278.1 + 22007 0.67 0.243284
Target:  5'- cGCUGGAACUcuUGGuaGGCCAGcGUGUg- -3'
miRNA:   3'- -CGGUCUUGG--ACCggCCGGUC-CACGag -5'
11976 3' -60.8 NC_003278.1 + 29254 0.67 0.243284
Target:  5'- cGCCGcGACCUGGgcaCUGGUgaAGGUGUUCu -3'
miRNA:   3'- -CGGUcUUGGACC---GGCCGg-UCCACGAG- -5'
11976 3' -60.8 NC_003278.1 + 8050 0.67 0.237006
Target:  5'- uGCuCGGcGCCUGGCUGGCCAccgGCa- -3'
miRNA:   3'- -CG-GUCuUGGACCGGCCGGUccaCGag -5'
11976 3' -60.8 NC_003278.1 + 28301 0.68 0.224857
Target:  5'- cGCCAGGucgaaGCCgcgGGCaugGGCCAGGUacGCcCg -3'
miRNA:   3'- -CGGUCU-----UGGa--CCGg--CCGGUCCA--CGaG- -5'
11976 3' -60.8 NC_003278.1 + 31533 0.68 0.224857
Target:  5'- gGCCAGcuacauggccAACCUGG-CGGCCAGGaaaacGCa- -3'
miRNA:   3'- -CGGUC----------UUGGACCgGCCGGUCCa----CGag -5'
11976 3' -60.8 NC_003278.1 + 18974 0.68 0.21495
Target:  5'- gGCCAccggcauGGACCcGGCCgaccuccuugccugcGGCCAGGUGaUCg -3'
miRNA:   3'- -CGGU-------CUUGGaCCGG---------------CCGGUCCACgAG- -5'
11976 3' -60.8 NC_003278.1 + 14038 0.68 0.213241
Target:  5'- cGCCGGAcauCCUGGCCcGCCAcGGccugGCg- -3'
miRNA:   3'- -CGGUCUu--GGACCGGcCGGU-CCa---CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.