Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11976 | 3' | -60.8 | NC_003278.1 | + | 34267 | 0.66 | 0.313827 |
Target: 5'- gGCCAGAGCUaUGGCCucgcugacGCgGGGgccGCUCc -3' miRNA: 3'- -CGGUCUUGG-ACCGGc-------CGgUCCa--CGAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 32742 | 0.66 | 0.313827 |
Target: 5'- gGCCAGuACUa--CCGGCCAgGGUGCa- -3' miRNA: 3'- -CGGUCuUGGaccGGCCGGU-CCACGag -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 31798 | 0.71 | 0.137739 |
Target: 5'- cCCGGGACa---CCGGCCAGGcGCUCg -3' miRNA: 3'- cGGUCUUGgaccGGCCGGUCCaCGAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 31533 | 0.68 | 0.224857 |
Target: 5'- gGCCAGcuacauggccAACCUGG-CGGCCAGGaaaacGCa- -3' miRNA: 3'- -CGGUC----------UUGGACCgGCCGGUCCa----CGag -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 31262 | 0.67 | 0.256255 |
Target: 5'- cCCGGAgcaGCCUGGCggcgGGCCucGGGUaucuGCUCu -3' miRNA: 3'- cGGUCU---UGGACCGg---CCGG--UCCA----CGAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 29254 | 0.67 | 0.243284 |
Target: 5'- cGCCGcGACCUGGgcaCUGGUgaAGGUGUUCu -3' miRNA: 3'- -CGGUcUUGGACC---GGCCGg-UCCACGAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 28301 | 0.68 | 0.224857 |
Target: 5'- cGCCAGGucgaaGCCgcgGGCaugGGCCAGGUacGCcCg -3' miRNA: 3'- -CGGUCU-----UGGa--CCGg--CCGGUCCA--CGaG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 22007 | 0.67 | 0.243284 |
Target: 5'- cGCUGGAACUcuUGGuaGGCCAGcGUGUg- -3' miRNA: 3'- -CGGUCUUGG--ACCggCCGGUC-CACGag -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 21507 | 0.72 | 0.109966 |
Target: 5'- gGCCcuGGGCCaGGCCGGCCAuGGUGa-- -3' miRNA: 3'- -CGGu-CUUGGaCCGGCCGGU-CCACgag -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 21464 | 0.73 | 0.087507 |
Target: 5'- cCCAGGGCCUcgGcGCCGGCCAGGccgGCcCg -3' miRNA: 3'- cGGUCUUGGA--C-CGGCCGGUCCa--CGaG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 21302 | 0.71 | 0.130244 |
Target: 5'- uCCAGGGCCUGGUgaaCGGCC---UGCUCg -3' miRNA: 3'- cGGUCUUGGACCG---GCCGGuccACGAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 21086 | 0.76 | 0.053272 |
Target: 5'- uGCCAGGACCaccgGGUuggCGGCCAGGccccacagcgcgaUGCUCa -3' miRNA: 3'- -CGGUCUUGGa---CCG---GCCGGUCC-------------ACGAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 21022 | 0.67 | 0.262951 |
Target: 5'- aCCAGcgGGCCgaucaacaGGCCGGCCAgcaugcggaucGGUGCg- -3' miRNA: 3'- cGGUC--UUGGa-------CCGGCCGGU-----------CCACGag -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 21014 | 0.7 | 0.162654 |
Target: 5'- cGCUguGGGGCCUGGCCG-CCAacccGGUGgUCc -3' miRNA: 3'- -CGG--UCUUGGACCGGCcGGU----CCACgAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 20234 | 0.75 | 0.067467 |
Target: 5'- gGCCAGAGCCUGGagaCGGUCAccaccgccacGGcccUGCUCg -3' miRNA: 3'- -CGGUCUUGGACCg--GCCGGU----------CC---ACGAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 19580 | 0.69 | 0.196786 |
Target: 5'- -gCAGGGCgUGGCUGuGCugCAGGUGCUg -3' miRNA: 3'- cgGUCUUGgACCGGC-CG--GUCCACGAg -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 19465 | 0.67 | 0.247117 |
Target: 5'- aGCCAGugcuuucacccguGCCUGuuGCgCGGCCAgcgcGGUGCUg -3' miRNA: 3'- -CGGUCu------------UGGAC--CG-GCCGGU----CCACGAg -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 18974 | 0.68 | 0.21495 |
Target: 5'- gGCCAccggcauGGACCcGGCCgaccuccuugccugcGGCCAGGUGaUCg -3' miRNA: 3'- -CGGU-------CUUGGaCCGG---------------CCGGUCCACgAG- -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 17862 | 0.74 | 0.085027 |
Target: 5'- gGCCAGcACCUGGgCGGUgCGGGUGUa- -3' miRNA: 3'- -CGGUCuUGGACCgGCCG-GUCCACGag -5' |
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11976 | 3' | -60.8 | NC_003278.1 | + | 16860 | 0.76 | 0.056646 |
Target: 5'- aGCCAGu-CCggugcGGCCGGCC-GGUGUUCu -3' miRNA: 3'- -CGGUCuuGGa----CCGGCCGGuCCACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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