miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11976 3' -60.8 NC_003278.1 + 14104 0.73 0.095366
Target:  5'- cGCCAG-GCCgUGGCgGGCCAGGaUGUcCg -3'
miRNA:   3'- -CGGUCuUGG-ACCGgCCGGUCC-ACGaG- -5'
11976 3' -60.8 NC_003278.1 + 17862 0.74 0.085027
Target:  5'- gGCCAGcACCUGGgCGGUgCGGGUGUa- -3'
miRNA:   3'- -CGGUCuUGGACCgGCCG-GUCCACGag -5'
11976 3' -60.8 NC_003278.1 + 13823 0.74 0.084782
Target:  5'- cCCGaauGACCUGGCgcuucacacgcucCGGCCAGGUGCUg -3'
miRNA:   3'- cGGUc--UUGGACCG-------------GCCGGUCCACGAg -5'
11976 3' -60.8 NC_003278.1 + 7895 0.75 0.067467
Target:  5'- gGCCAGGggggagggugggGCCgUGGUCGGCCAGGccgugGUUCg -3'
miRNA:   3'- -CGGUCU------------UGG-ACCGGCCGGUCCa----CGAG- -5'
11976 3' -60.8 NC_003278.1 + 12625 0.75 0.061828
Target:  5'- aUgAGcACCUGGCCGGCCAGGUuCUg -3'
miRNA:   3'- cGgUCuUGGACCGGCCGGUCCAcGAg -5'
11976 3' -60.8 NC_003278.1 + 16860 0.76 0.056646
Target:  5'- aGCCAGu-CCggugcGGCCGGCC-GGUGUUCu -3'
miRNA:   3'- -CGGUCuuGGa----CCGGCCGGuCCACGAG- -5'
11976 3' -60.8 NC_003278.1 + 19580 0.69 0.196786
Target:  5'- -gCAGGGCgUGGCUGuGCugCAGGUGCUg -3'
miRNA:   3'- cgGUCUUGgACCGGC-CG--GUCCACGAg -5'
11976 3' -60.8 NC_003278.1 + 8694 0.68 0.213241
Target:  5'- -gUAGAGgUUGgcGCCGGcCCAGGUGUUCa -3'
miRNA:   3'- cgGUCUUgGAC--CGGCC-GGUCCACGAG- -5'
11976 3' -60.8 NC_003278.1 + 28301 0.68 0.224857
Target:  5'- cGCCAGGucgaaGCCgcgGGCaugGGCCAGGUacGCcCg -3'
miRNA:   3'- -CGGUCU-----UGGa--CCGg--CCGGUCCA--CGaG- -5'
11976 3' -60.8 NC_003278.1 + 10506 0.66 0.298568
Target:  5'- uCCAGAGCCUcgaGGCUgucagccauuGGCCGGGcGCc- -3'
miRNA:   3'- cGGUCUUGGA---CCGG----------CCGGUCCaCGag -5'
11976 3' -60.8 NC_003278.1 + 6790 0.66 0.29782
Target:  5'- cGUCGGGcaugucgGCCUGGUCGGUgagcaggaGGGUGCg- -3'
miRNA:   3'- -CGGUCU-------UGGACCGGCCGg-------UCCACGag -5'
11976 3' -60.8 NC_003278.1 + 9626 0.66 0.297074
Target:  5'- gGCCuGGGCCUGGCgcucgcgggaaagggCGGCCucgagggccgugauGGUGC-Cg -3'
miRNA:   3'- -CGGuCUUGGACCG---------------GCCGGu-------------CCACGaG- -5'
11976 3' -60.8 NC_003278.1 + 5024 0.66 0.283889
Target:  5'- cGCCG--ACCUGGCCgaacucGGCUuGGGUGCg- -3'
miRNA:   3'- -CGGUcuUGGACCGG------CCGG-UCCACGag -5'
11976 3' -60.8 NC_003278.1 + 14069 0.67 0.269787
Target:  5'- uGCgCAGGuCCaGGCgGGUCAGGUGUc- -3'
miRNA:   3'- -CG-GUCUuGGaCCGgCCGGUCCACGag -5'
11976 3' -60.8 NC_003278.1 + 14735 0.67 0.262951
Target:  5'- cGCCGGAGgCUGGUaaGGCgAuGGUGCg- -3'
miRNA:   3'- -CGGUCUUgGACCGg-CCGgU-CCACGag -5'
11976 3' -60.8 NC_003278.1 + 21022 0.67 0.262951
Target:  5'- aCCAGcgGGCCgaucaacaGGCCGGCCAgcaugcggaucGGUGCg- -3'
miRNA:   3'- cGGUC--UUGGa-------CCGGCCGGU-----------CCACGag -5'
11976 3' -60.8 NC_003278.1 + 31262 0.67 0.256255
Target:  5'- cCCGGAgcaGCCUGGCggcgGGCCucGGGUaucuGCUCu -3'
miRNA:   3'- cGGUCU---UGGACCGg---CCGG--UCCA----CGAG- -5'
11976 3' -60.8 NC_003278.1 + 19465 0.67 0.247117
Target:  5'- aGCCAGugcuuucacccguGCCUGuuGCgCGGCCAgcgcGGUGCUg -3'
miRNA:   3'- -CGGUCu------------UGGAC--CG-GCCGGU----CCACGAg -5'
11976 3' -60.8 NC_003278.1 + 29254 0.67 0.243284
Target:  5'- cGCCGcGACCUGGgcaCUGGUgaAGGUGUUCu -3'
miRNA:   3'- -CGGUcUUGGACC---GGCCGg-UCCACGAG- -5'
11976 3' -60.8 NC_003278.1 + 22007 0.67 0.243284
Target:  5'- cGCUGGAACUcuUGGuaGGCCAGcGUGUg- -3'
miRNA:   3'- -CGGUCUUGG--ACCggCCGGUC-CACGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.