Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11976 | 5' | -57.4 | NC_003278.1 | + | 21411 | 0.66 | 0.48926 |
Target: 5'- cGGCGCCGCCgacgcgcUGGACGGCG-CGc -3' miRNA: 3'- aCUGCGGUGGgacc---ACCUGUCGUuGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 13184 | 0.66 | 0.488213 |
Target: 5'- gUGACggugcagGCCGCCCaGGgcaACGGCAGCGc -3' miRNA: 3'- -ACUG-------CGGUGGGaCCaccUGUCGUUGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 20014 | 0.66 | 0.487167 |
Target: 5'- cGGCGCCAUgcccggcaugcucaaCCUGGcagccgcgggcgacaUGGACcucGGCGACa -3' miRNA: 3'- aCUGCGGUG---------------GGACC---------------ACCUG---UCGUUGc -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 23184 | 0.66 | 0.468523 |
Target: 5'- -cGCGCCGCCCgcgccGaGUGGAaccgccuaCAGCGugGc -3' miRNA: 3'- acUGCGGUGGGa----C-CACCU--------GUCGUugC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 19365 | 0.66 | 0.468523 |
Target: 5'- -cGCGgCGCCCUGGagcaGGuCAGCAccGCGc -3' miRNA: 3'- acUGCgGUGGGACCa---CCuGUCGU--UGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 13378 | 0.66 | 0.468523 |
Target: 5'- cGAUGCCGCCCgGGcccgcuuGACGGCcuACGu -3' miRNA: 3'- aCUGCGGUGGGaCCac-----CUGUCGu-UGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 22410 | 0.66 | 0.462389 |
Target: 5'- cGACGCCggcuAUCCggugccGGUGuuccggcucacggucGACGGCAACGa -3' miRNA: 3'- aCUGCGG----UGGGa-----CCAC---------------CUGUCGUUGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 9076 | 0.66 | 0.458324 |
Target: 5'- cGAuacCGCCGCCCUGGagucGGcCAGUuggGGCGc -3' miRNA: 3'- aCU---GCGGUGGGACCa---CCuGUCG---UUGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 30546 | 0.66 | 0.448245 |
Target: 5'- ---gGCCACCUUcuggcGGUGGuCGGCGGCc -3' miRNA: 3'- acugCGGUGGGA-----CCACCuGUCGUUGc -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 7455 | 0.66 | 0.447244 |
Target: 5'- uUGuCGUUGCCgCUGGUGGuggugucguaccaGCGGUAGCGc -3' miRNA: 3'- -ACuGCGGUGG-GACCACC-------------UGUCGUUGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 31355 | 0.66 | 0.447244 |
Target: 5'- uUGGCGCCAgggaguugccgcuCCCUGGUGccucuucuuCAGCGccgcGCGg -3' miRNA: 3'- -ACUGCGGU-------------GGGACCACcu-------GUCGU----UGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 32673 | 0.66 | 0.43829 |
Target: 5'- uUGACGCCgaugauggcGCCCgaGGUgucGGucCAGCGGCGc -3' miRNA: 3'- -ACUGCGG---------UGGGa-CCA---CCu-GUCGUUGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 807 | 0.66 | 0.43829 |
Target: 5'- --uCGCC-CCUUGGguagaGGACAGUGACa -3' miRNA: 3'- acuGCGGuGGGACCa----CCUGUCGUUGc -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 14569 | 0.67 | 0.428463 |
Target: 5'- -uACGCCACCCaggacugGGUG-ACGGCGAa- -3' miRNA: 3'- acUGCGGUGGGa------CCACcUGUCGUUgc -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 12702 | 0.67 | 0.418767 |
Target: 5'- uUGcCGCCACCacacgcGGUGGAgCAGCuggacuACGa -3' miRNA: 3'- -ACuGCGGUGGga----CCACCU-GUCGu-----UGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 10461 | 0.67 | 0.409206 |
Target: 5'- cGGCGUCucgagcaugacgGCCUcGGUGGGCuucGGCGGCGu -3' miRNA: 3'- aCUGCGG------------UGGGaCCACCUG---UCGUUGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 8025 | 0.67 | 0.398847 |
Target: 5'- aUGGCGCCGgCCguggcggUGGUGGugagguCAGCcauGCGg -3' miRNA: 3'- -ACUGCGGUgGG-------ACCACCu-----GUCGu--UGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 8006 | 0.67 | 0.390498 |
Target: 5'- gGGCGUaACCCUuccGGUuGACGGCGGCa -3' miRNA: 3'- aCUGCGgUGGGA---CCAcCUGUCGUUGc -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 28581 | 0.67 | 0.390498 |
Target: 5'- cGGCGUCgauGCCgUGGU--GCAGCAGCGc -3' miRNA: 3'- aCUGCGG---UGGgACCAccUGUCGUUGC- -5' |
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11976 | 5' | -57.4 | NC_003278.1 | + | 19409 | 0.67 | 0.390498 |
Target: 5'- gGGCGCCGCgCUGGgugcGGAaGGCGcgcACGu -3' miRNA: 3'- aCUGCGGUGgGACCa---CCUgUCGU---UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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