miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11976 5' -57.4 NC_003278.1 + 8430 0.67 0.381355
Target:  5'- gGGCGCCGCagcgCUGGUagcagaccaGGcgcagcGCGGCAGCGa -3'
miRNA:   3'- aCUGCGGUGg---GACCA---------CC------UGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 22625 0.68 0.372357
Target:  5'- cGGCGCCGCgCgGGgGGAUgcgAGCAGCc -3'
miRNA:   3'- aCUGCGGUGgGaCCaCCUG---UCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 29249 0.68 0.34624
Target:  5'- cGugGCCGCC--GGUGcgaucuucaccGGCAGCGGCGc -3'
miRNA:   3'- aCugCGGUGGgaCCAC-----------CUGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 29552 0.68 0.337831
Target:  5'- cGGCGCCAagggCCUGGUGGcGCuGGCAu-- -3'
miRNA:   3'- aCUGCGGUg---GGACCACC-UG-UCGUugc -5'
11976 5' -57.4 NC_003278.1 + 21699 0.69 0.313503
Target:  5'- aUGGCGCCggcgcucuuGCCCaGGUcgcccagcauGGcCAGCAGCGg -3'
miRNA:   3'- -ACUGCGG---------UGGGaCCA----------CCuGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 21516 0.69 0.290525
Target:  5'- cGGCGCCgagGCCCUGGgccaGGcCGGCcAUGg -3'
miRNA:   3'- aCUGCGG---UGGGACCa---CCuGUCGuUGC- -5'
11976 5' -57.4 NC_003278.1 + 30883 0.69 0.290525
Target:  5'- -cACGCCGCUCUGGccgcugucgcgcUGGGCgaucGGCAGCa -3'
miRNA:   3'- acUGCGGUGGGACC------------ACCUG----UCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 8687 0.7 0.255198
Target:  5'- uUGGCGCCgGCCCaGGUGuuCAGuCGACGc -3'
miRNA:   3'- -ACUGCGG-UGGGaCCACcuGUC-GUUGC- -5'
11976 5' -57.4 NC_003278.1 + 21657 0.71 0.242084
Target:  5'- cGGCGCCaucgguGCCCUGGUGcuCGGCGccaGCGc -3'
miRNA:   3'- aCUGCGG------UGGGACCACcuGUCGU---UGC- -5'
11976 5' -57.4 NC_003278.1 + 6385 0.71 0.229537
Target:  5'- -cGCGCCuuccauGCCCUGGUgcgGGGCAGUGGCc -3'
miRNA:   3'- acUGCGG------UGGGACCA---CCUGUCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 25421 0.71 0.222873
Target:  5'- uUGGCGaucuggaccgguaCCGCCCUGGUauccGCAGCAGCGc -3'
miRNA:   3'- -ACUGC-------------GGUGGGACCAcc--UGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 13575 0.71 0.21175
Target:  5'- gGGCGCCugggCUGGUGuGGCGGCGAUGu -3'
miRNA:   3'- aCUGCGGugg-GACCAC-CUGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 23062 0.73 0.155951
Target:  5'- cUGGuCGCCAUCCUGGcGGgugagguugauguGCGGCAGCGc -3'
miRNA:   3'- -ACU-GCGGUGGGACCaCC-------------UGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 26593 0.74 0.13583
Target:  5'- cGGCGCCuACCCUGGcGGAC-GCGAa- -3'
miRNA:   3'- aCUGCGG-UGGGACCaCCUGuCGUUgc -5'
11976 5' -57.4 NC_003278.1 + 4302 0.76 0.108053
Target:  5'- cGGCGCUACUgaggggCgagGGUGGGCGGCAGCa -3'
miRNA:   3'- aCUGCGGUGG------Ga--CCACCUGUCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 12596 1.09 0.000325
Target:  5'- uUGACGCCACCCUGGUGGACAGCAACGa -3'
miRNA:   3'- -ACUGCGGUGGGACCACCUGUCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.