miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11976 5' -57.4 NC_003278.1 + 807 0.66 0.43829
Target:  5'- --uCGCC-CCUUGGguagaGGACAGUGACa -3'
miRNA:   3'- acuGCGGuGGGACCa----CCUGUCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 4302 0.76 0.108053
Target:  5'- cGGCGCUACUgaggggCgagGGUGGGCGGCAGCa -3'
miRNA:   3'- aCUGCGGUGG------Ga--CCACCUGUCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 6385 0.71 0.229537
Target:  5'- -cGCGCCuuccauGCCCUGGUgcgGGGCAGUGGCc -3'
miRNA:   3'- acUGCGG------UGGGACCA---CCUGUCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 7455 0.66 0.447244
Target:  5'- uUGuCGUUGCCgCUGGUGGuggugucguaccaGCGGUAGCGc -3'
miRNA:   3'- -ACuGCGGUGG-GACCACC-------------UGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 8006 0.67 0.390498
Target:  5'- gGGCGUaACCCUuccGGUuGACGGCGGCa -3'
miRNA:   3'- aCUGCGgUGGGA---CCAcCUGUCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 8025 0.67 0.398847
Target:  5'- aUGGCGCCGgCCguggcggUGGUGGugagguCAGCcauGCGg -3'
miRNA:   3'- -ACUGCGGUgGG-------ACCACCu-----GUCGu--UGC- -5'
11976 5' -57.4 NC_003278.1 + 8430 0.67 0.381355
Target:  5'- gGGCGCCGCagcgCUGGUagcagaccaGGcgcagcGCGGCAGCGa -3'
miRNA:   3'- aCUGCGGUGg---GACCA---------CC------UGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 8687 0.7 0.255198
Target:  5'- uUGGCGCCgGCCCaGGUGuuCAGuCGACGc -3'
miRNA:   3'- -ACUGCGG-UGGGaCCACcuGUC-GUUGC- -5'
11976 5' -57.4 NC_003278.1 + 9076 0.66 0.458324
Target:  5'- cGAuacCGCCGCCCUGGagucGGcCAGUuggGGCGc -3'
miRNA:   3'- aCU---GCGGUGGGACCa---CCuGUCG---UUGC- -5'
11976 5' -57.4 NC_003278.1 + 10461 0.67 0.409206
Target:  5'- cGGCGUCucgagcaugacgGCCUcGGUGGGCuucGGCGGCGu -3'
miRNA:   3'- aCUGCGG------------UGGGaCCACCUG---UCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 12596 1.09 0.000325
Target:  5'- uUGACGCCACCCUGGUGGACAGCAACGa -3'
miRNA:   3'- -ACUGCGGUGGGACCACCUGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 12702 0.67 0.418767
Target:  5'- uUGcCGCCACCacacgcGGUGGAgCAGCuggacuACGa -3'
miRNA:   3'- -ACuGCGGUGGga----CCACCU-GUCGu-----UGC- -5'
11976 5' -57.4 NC_003278.1 + 13184 0.66 0.488213
Target:  5'- gUGACggugcagGCCGCCCaGGgcaACGGCAGCGc -3'
miRNA:   3'- -ACUG-------CGGUGGGaCCaccUGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 13378 0.66 0.468523
Target:  5'- cGAUGCCGCCCgGGcccgcuuGACGGCcuACGu -3'
miRNA:   3'- aCUGCGGUGGGaCCac-----CUGUCGu-UGC- -5'
11976 5' -57.4 NC_003278.1 + 13575 0.71 0.21175
Target:  5'- gGGCGCCugggCUGGUGuGGCGGCGAUGu -3'
miRNA:   3'- aCUGCGGugg-GACCAC-CUGUCGUUGC- -5'
11976 5' -57.4 NC_003278.1 + 14569 0.67 0.428463
Target:  5'- -uACGCCACCCaggacugGGUG-ACGGCGAa- -3'
miRNA:   3'- acUGCGGUGGGa------CCACcUGUCGUUgc -5'
11976 5' -57.4 NC_003278.1 + 19365 0.66 0.468523
Target:  5'- -cGCGgCGCCCUGGagcaGGuCAGCAccGCGc -3'
miRNA:   3'- acUGCgGUGGGACCa---CCuGUCGU--UGC- -5'
11976 5' -57.4 NC_003278.1 + 19409 0.67 0.390498
Target:  5'- gGGCGCCGCgCUGGgugcGGAaGGCGcgcACGu -3'
miRNA:   3'- aCUGCGGUGgGACCa---CCUgUCGU---UGC- -5'
11976 5' -57.4 NC_003278.1 + 20014 0.66 0.487167
Target:  5'- cGGCGCCAUgcccggcaugcucaaCCUGGcagccgcgggcgacaUGGACcucGGCGACa -3'
miRNA:   3'- aCUGCGGUG---------------GGACC---------------ACCUG---UCGUUGc -5'
11976 5' -57.4 NC_003278.1 + 21411 0.66 0.48926
Target:  5'- cGGCGCCGCCgacgcgcUGGACGGCG-CGc -3'
miRNA:   3'- aCUGCGGUGGgacc---ACCUGUCGUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.