Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11977 | 3' | -49.4 | NC_003278.1 | + | 12658 | 1.11 | 0.002061 |
Target: 5'- gCCAGCGCAUGACAACGAACUUCGUCGc -3' miRNA: 3'- -GGUCGCGUACUGUUGCUUGAAGCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 7508 | 0.73 | 0.556172 |
Target: 5'- cCCAGCGC-UGgucGCGGCGGuagUCGUCGa -3' miRNA: 3'- -GGUCGCGuAC---UGUUGCUugaAGCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 10308 | 0.71 | 0.649189 |
Target: 5'- gCGGCGCuUGACGACGAcacGCUcgGUCa -3' miRNA: 3'- gGUCGCGuACUGUUGCU---UGAagCAGc -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 13320 | 0.7 | 0.740964 |
Target: 5'- aUCAGCGaCggGGCGACGGuCggCGUCGu -3' miRNA: 3'- -GGUCGC-GuaCUGUUGCUuGaaGCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 6822 | 0.7 | 0.752021 |
Target: 5'- gCCGGCgGCGaGGUAgagcuucgcGCGGGCUUCGUCGg -3' miRNA: 3'- -GGUCG-CGUaCUGU---------UGCUUGAAGCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 13016 | 0.69 | 0.784312 |
Target: 5'- aCCAgGCGCuUGACGuuguaguucgcgGCGAGCUg-GUCGa -3' miRNA: 3'- -GGU-CGCGuACUGU------------UGCUUGAagCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 4552 | 0.69 | 0.804969 |
Target: 5'- uUCGGCGCcuAUGGCGACGuGCUggCGUg- -3' miRNA: 3'- -GGUCGCG--UACUGUUGCuUGAa-GCAgc -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 28769 | 0.68 | 0.833445 |
Target: 5'- aCCAGCGCuggauguucaucgAUGACGcggcCGAGCg-CGUCGc -3' miRNA: 3'- -GGUCGCG-------------UACUGUu---GCUUGaaGCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 26172 | 0.68 | 0.834392 |
Target: 5'- cCCAGCGCGucggagUGGCcaAGCGGACUaUUGcCGg -3' miRNA: 3'- -GGUCGCGU------ACUG--UUGCUUGA-AGCaGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 22608 | 0.68 | 0.843735 |
Target: 5'- -gGGCuggaGUGACAGCGGACUg-GUCGa -3' miRNA: 3'- ggUCGcg--UACUGUUGCUUGAagCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 21267 | 0.68 | 0.852827 |
Target: 5'- gCCGGCGCGcuuCAGCG-ACUUCGg-- -3' miRNA: 3'- -GGUCGCGUacuGUUGCuUGAAGCagc -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 21356 | 0.68 | 0.852827 |
Target: 5'- uCCAGCGCGUcGGCGGCGccg--CGaUCGa -3' miRNA: 3'- -GGUCGCGUA-CUGUUGCuugaaGC-AGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 12744 | 0.67 | 0.865116 |
Target: 5'- -uGGCgGCAacuggcugaggucgaUGGCGACGAAgUUCGUUGu -3' miRNA: 3'- ggUCG-CGU---------------ACUGUUGCUUgAAGCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 34471 | 0.67 | 0.87022 |
Target: 5'- aCAGUGCuagcggGGCGGCGuACUccaCGUCGg -3' miRNA: 3'- gGUCGCGua----CUGUUGCuUGAa--GCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 28560 | 0.67 | 0.878502 |
Target: 5'- gCAGCGCgAUGGCGuCGAAgauacCUUCGaCGa -3' miRNA: 3'- gGUCGCG-UACUGUuGCUU-----GAAGCaGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 12561 | 0.67 | 0.879315 |
Target: 5'- cCCAGCGCAugagggccauggcggUGGCGgcauagaccugcagGCGggUggugUCGUUGa -3' miRNA: 3'- -GGUCGCGU---------------ACUGU--------------UGCuuGa---AGCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 18401 | 0.67 | 0.886497 |
Target: 5'- aCGGCGCAgucagUGcCAACGGcgucaugcugcGCUUCGcCGg -3' miRNA: 3'- gGUCGCGU-----ACuGUUGCU-----------UGAAGCaGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 22926 | 0.67 | 0.886497 |
Target: 5'- gUCAGCaGguUGGCGuCGGAC-UCGUUGg -3' miRNA: 3'- -GGUCG-CguACUGUuGCUUGaAGCAGC- -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 6572 | 0.67 | 0.8942 |
Target: 5'- gCCAGaGCAUGACggUGGugaccACcUCGUCc -3' miRNA: 3'- -GGUCgCGUACUGuuGCU-----UGaAGCAGc -5' |
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11977 | 3' | -49.4 | NC_003278.1 | + | 30821 | 0.66 | 0.915494 |
Target: 5'- cCCAGCGC--GACAGCGGccagaGCggCGUg- -3' miRNA: 3'- -GGUCGCGuaCUGUUGCU-----UGaaGCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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