miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11977 5' -57.4 NC_003278.1 + 30575 0.66 0.483635
Target:  5'- uUCAGCaggucgcgcagGGUUGCCgcgucgGCCACCuuCugGCg -3'
miRNA:   3'- gAGUCGg----------UCAACGG------CGGUGGu-GugCG- -5'
11977 5' -57.4 NC_003278.1 + 7415 0.66 0.483635
Target:  5'- gCUCGGCCAcuucgGCgGCgguggcagacugCACUGCGCGCa -3'
miRNA:   3'- -GAGUCGGUcaa--CGgCG------------GUGGUGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 4578 0.66 0.481549
Target:  5'- -cCGGCCAGgcccacuugaugUGCuCGCaguugauCCGCGCGCc -3'
miRNA:   3'- gaGUCGGUCa-----------ACG-GCGgu-----GGUGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 26646 0.66 0.472215
Target:  5'- gUCcGCCAGgguaggcGCCGaugaucgcgcugaCCACCugGCGCc -3'
miRNA:   3'- gAGuCGGUCaa-----CGGC-------------GGUGGugUGCG- -5'
11977 5' -57.4 NC_003278.1 + 17325 0.66 0.462974
Target:  5'- uUCAuGCCGGUguacuUGCCaucggcgcugacGCCGCCGaugacCGCGCu -3'
miRNA:   3'- gAGU-CGGUCA-----ACGG------------CGGUGGU-----GUGCG- -5'
11977 5' -57.4 NC_003278.1 + 30335 0.66 0.462974
Target:  5'- ---cGCCAGgacGCCGUCaacGCCgACGCGCc -3'
miRNA:   3'- gaguCGGUCaa-CGGCGG---UGG-UGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 7463 0.66 0.452819
Target:  5'- cCUgGGCC--UUGUCGUUGCCGCugGUg -3'
miRNA:   3'- -GAgUCGGucAACGGCGGUGGUGugCG- -5'
11977 5' -57.4 NC_003278.1 + 19954 0.66 0.452819
Target:  5'- --gGGCCuGUUGCCGCagCGCCuGCAucUGCg -3'
miRNA:   3'- gagUCGGuCAACGGCG--GUGG-UGU--GCG- -5'
11977 5' -57.4 NC_003278.1 + 33227 0.66 0.442786
Target:  5'- gCUCGcGCCAGUcGCUGUCGCU-CAgGCc -3'
miRNA:   3'- -GAGU-CGGUCAaCGGCGGUGGuGUgCG- -5'
11977 5' -57.4 NC_003278.1 + 14906 0.66 0.43288
Target:  5'- -cCAGCCGGcUUGCagCGCCcAUCACgcucaGCGCg -3'
miRNA:   3'- gaGUCGGUC-AACG--GCGG-UGGUG-----UGCG- -5'
11977 5' -57.4 NC_003278.1 + 22975 0.66 0.43288
Target:  5'- -gCAGCCGGcuuucacgGUgGCCACCGCAuCGa -3'
miRNA:   3'- gaGUCGGUCaa------CGgCGGUGGUGU-GCg -5'
11977 5' -57.4 NC_003278.1 + 9079 0.66 0.43288
Target:  5'- gCUCGGCgG--UGCCGCCGgCAUAgcCGCc -3'
miRNA:   3'- -GAGUCGgUcaACGGCGGUgGUGU--GCG- -5'
11977 5' -57.4 NC_003278.1 + 21115 0.66 0.43288
Target:  5'- -cCGGCCAGca-CCGCCACgACG-GCg -3'
miRNA:   3'- gaGUCGGUCaacGGCGGUGgUGUgCG- -5'
11977 5' -57.4 NC_003278.1 + 19678 0.66 0.43288
Target:  5'- ---cGCCAuugGCCGCCuggauCUGCGCGCg -3'
miRNA:   3'- gaguCGGUcaaCGGCGGu----GGUGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 32901 0.67 0.426023
Target:  5'- gCUCAGCCGgacgaagggagacccGUaucucacUGCgGCCACUACgGCGUa -3'
miRNA:   3'- -GAGUCGGU---------------CA-------ACGgCGGUGGUG-UGCG- -5'
11977 5' -57.4 NC_003278.1 + 9700 0.67 0.423104
Target:  5'- cCUCuGCCugauGUUGCuCGCCgGCUGCAacaGCg -3'
miRNA:   3'- -GAGuCGGu---CAACG-GCGG-UGGUGUg--CG- -5'
11977 5' -57.4 NC_003278.1 + 17211 0.67 0.421165
Target:  5'- --aAGCCGGgcgaggaugaaGCCGCgACCAauaGCGCg -3'
miRNA:   3'- gagUCGGUCaa---------CGGCGgUGGUg--UGCG- -5'
11977 5' -57.4 NC_003278.1 + 8102 0.67 0.413461
Target:  5'- -cCAGCCAGgcGCCGagcagggCACCgaacaGCAUGCc -3'
miRNA:   3'- gaGUCGGUCaaCGGCg------GUGG-----UGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 15798 0.67 0.413461
Target:  5'- -aUAGCCAcccaGCuCGCCAUCGgGCGCg -3'
miRNA:   3'- gaGUCGGUcaa-CG-GCGGUGGUgUGCG- -5'
11977 5' -57.4 NC_003278.1 + 22167 0.67 0.403013
Target:  5'- gUCAGCCAucUGCCGCaguacguCCaggcucaACGCGCu -3'
miRNA:   3'- gAGUCGGUcaACGGCGgu-----GG-------UGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.